Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Metagenome and Microbes Environmental Ontology Resource Report Resource Website |
Metagenome and Microbes Environmental Ontology (RRID:SCR_010359) | MEO | data or information resource, ontology, controlled vocabulary | Ontology for organismal habitats (especially focused on microbes) | owl | is listed by: BioPortal | nlx_157476 | SCR_010359 | 2026-02-17 10:01:28 | 0 | |||||||||
|
Minimal Information about any Sequence Controlled Vocabularies Resource Report Resource Website |
Minimal Information about any Sequence Controlled Vocabularies (RRID:SCR_010363) | MIXSCV | data or information resource, ontology, controlled vocabulary | Controlled vocabularies for the MIxS (Minimal Information about any Sequence) family of metadata checklists. See http://gensc.org/gc_wiki/index.php/MIxS for details on the MIxS checklists. | obo | is listed by: BioPortal | nlx_157481 | SCR_010363 | Minimal Information about any Sequence (MIxS) Controlled Vocabularies, MIxS Controlled Vocabularies | 2026-02-17 10:01:28 | 0 | ||||||||
|
Vertebrate Homologous Organ Group Ontology Resource Report Resource Website |
Vertebrate Homologous Organ Group Ontology (RRID:SCR_010444) | VHOG | data or information resource, ontology, controlled vocabulary | A multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available. | obo | is listed by: BioPortal | nlx_157623 | SCR_010444 | 2026-02-17 10:01:48 | 0 | |||||||||
|
Veterans Health Administration National Drug File Resource Report Resource Website |
Veterans Health Administration National Drug File (RRID:SCR_010445) | VANDF, NDF | data or information resource, ontology, controlled vocabulary | Ontology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes. | umls | is listed by: BioPortal | nlx_157626 | SCR_010445 | 2026-02-17 10:01:45 | 0 | |||||||||
|
Vital Sign Ontology Resource Report Resource Website 1+ mentions |
Vital Sign Ontology (RRID:SCR_010446) | VSO | data or information resource, ontology, controlled vocabulary | An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements. | owl | is listed by: BioPortal | nlx_157627 | SCR_010446 | 2026-02-17 10:01:52 | 1 | |||||||||
|
WHO Adverse Reaction Terminology Resource Report Resource Website |
WHO Adverse Reaction Terminology (RRID:SCR_010447) | WHO-ART | data or information resource, controlled vocabulary | Ontology of the WHO adverse reaction terminology, 1997. | umls |
is listed by: BioPortal has parent organization: World Health Organization |
nlx_157628 | SCR_010447 | World Health Organization (WHO) Adverse Reaction Terminology, World Health Organization Adverse Reaction Terminology | 2026-02-17 10:01:29 | 0 | ||||||||
|
suicideo Resource Report Resource Website |
suicideo (RRID:SCR_010451) | SuicidO | data or information resource, ontology, controlled vocabulary | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157632 | SCR_010451 | 2026-02-17 10:01:29 | 0 | |||||||||
|
Pseudogene Resource Report Resource Website 100+ mentions |
Pseudogene (RRID:SCR_010453) | pseudo | data or information resource, ontology, controlled vocabulary | Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin. | obo | is listed by: BioPortal | nlx_157640 | SCR_010453 | 2026-02-17 10:01:46 | 141 | |||||||||
|
Terminology for the Description of Dynamics Resource Report Resource Website 1+ mentions |
Terminology for the Description of Dynamics (RRID:SCR_010454) | TEDDY | data or information resource, ontology, controlled vocabulary | Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. | Ontology for dynamical behaviors, Systems Biology, Synthetic Biology, ontology, owl, dynamical behaviors, observable dynamical phenomena, control elements, bio-models and biological systems | is listed by: BioPortal | nlx_157641 | http://purl.bioontology.org/ontology/MO | SCR_010454 | 2026-02-17 10:01:53 | 9 | ||||||||
|
STATistics Ontology Resource Report Resource Website |
STATistics Ontology (RRID:SCR_010421) | STATO | data or information resource, ontology, controlled vocabulary | A general-purpose STATistics Ontology to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results. | owl | is listed by: BioPortal | nlx_157579 | SCR_010421 | 2026-02-17 10:01:45 | 0 | |||||||||
|
Sage Bionetworks Synapse Ontology Resource Report Resource Website |
Sage Bionetworks Synapse Ontology (RRID:SCR_010422) | SYN | data or information resource, ontology, controlled vocabulary | Controlled vocabulary used for various entity properties in the Synapse platform. | owl | is listed by: BioPortal | nlx_157580 | SCR_010422 | 2026-02-17 10:01:52 | 0 | |||||||||
|
Sample Processing and Separation Techniques Ontology Resource Report Resource Website |
Sample Processing and Separation Techniques Ontology (RRID:SCR_010423) | SEP | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157581 | SCR_010423 | 2026-02-17 10:01:29 | 0 | |||||||||
|
Taxonomic Rank Vocabulary Resource Report Resource Website |
Taxonomic Rank Vocabulary (RRID:SCR_010430) | TAXRANK | data or information resource, ontology, controlled vocabulary | A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms. | obo | is listed by: BioPortal | nlx_157606 | SCR_010430 | 2026-02-17 10:01:52 | 0 | |||||||||
|
Ontology of Geographical Region Resource Report Resource Website |
Ontology of Geographical Region (RRID:SCR_010398) | OGR | data or information resource, ontology, controlled vocabulary | Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. | owl | is listed by: BioPortal | Diabetes | nlx_157530 | SCR_010398 | 2026-02-17 10:01:51 | 0 | ||||||||
|
Taxonomy for Rehabilitation of Knee Conditions Resource Report Resource Website |
Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) | TRAK | data or information resource, ontology, controlled vocabulary | Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. | obo | is listed by: BioPortal | nlx_157607 | SCR_010431 | 2026-02-17 10:01:29 | 0 | |||||||||
|
Traditional Medicine Other Factors Value Set Resource Report Resource Website |
Traditional Medicine Other Factors Value Set (RRID:SCR_010437) | TM-OTHER-FACTORS | data or information resource, ontology, controlled vocabulary | Ontology of the value set for the Other Factors property of the International Classification of Traditional Medicine (ICTM). | owl | is listed by: BioPortal | nlx_157614 | SCR_010437 | 2026-02-17 10:01:45 | 0 | |||||||||
|
Tribolium Ontology Resource Report Resource Website |
Tribolium Ontology (RRID:SCR_010440) | TRON | data or information resource, ontology, controlled vocabulary | Ontology about the anatomical structures of the red flour beetle Tribolium castaneum in the developmental stages larva, pupa and adult. | obo | is listed by: BioPortal | nlx_157617 | SCR_010440 | 2026-02-17 10:01:48 | 0 | |||||||||
|
Plant Anatomy Resource Report Resource Website |
Plant Anatomy (RRID:SCR_010408) | PAE | data or information resource, ontology, controlled vocabulary | THIS RESOURCES IS NO LONGER IN SERVICE, documented on April 23, 2014. REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/ | obo |
is listed by: BioPortal has parent organization: Plant Ontology |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_157553 | SCR_010408 | 2026-02-17 10:01:47 | 0 | ||||||||
|
Radiology Lexicon Resource Report Resource Website |
Radiology Lexicon (RRID:SCR_010418) | RADLEX | data or information resource, ontology, controlled vocabulary | A controlled terminology for radiology-a single unified source of radiology terms for radiology practice, education, and research. For license information see : http://www.rsna.org/uploadedFiles/RSNA/Content/Informatics/radlex_public_license_version_1-0-1.pdf Converted to use OWL format submissions | owl | is listed by: BioPortal | nlx_157567 | SCR_010418 | 2026-02-17 10:01:52 | 0 | |||||||||
|
Robert Hoehndorf Version of MeSH Resource Report Resource Website |
Robert Hoehndorf Version of MeSH (RRID:SCR_010419) | RH-MESH | data or information resource, ontology, controlled vocabulary | Ontology of a modified version of Medical Subjects Headings Thesaurus 2014, that is an OWL representation of MeSH so that it can be integrated with other ontologies represented in OWL. It contains all terms that are in MeSH and in the MeSH concept tree, including the pharmacological actions (represented as subclass relations). Concepts in the MeSH concept tree are merged with MeSH term ids. Note that, while this ontology is composed of MeSH terms, it does not correspond directly to UMLS MeSH. In particular, a single term in UMLS MeSH often results in multiple classes in this ontology. For example, in MeSH there is a single term with the label Heart. The internal code (unique identifier) for this term is A07.541. In this ontology there are two entirely different terms, both of which have the label Heart. The codes for these terms are A07.541 and D006321. | owl |
is listed by: BioPortal is related to: MeSH |
nlx_157577 | SCR_010419 | 2026-02-17 10:01:29 | 0 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
