Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
STEPC Resource Report Resource Website |
STEPC (RRID:SCR_009096) | STEPC | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. Software application (entry from Genetic Analysis Software) | gene, genetic, genomic | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154114 | SCR_009096 | STatistical Explanation for Positional Cloning | 2026-02-13 10:56:19 | 0 | |||||||
|
RECORD Resource Report Resource Website 1000+ mentions |
RECORD (RRID:SCR_009097) | RECORD | software resource, software application | Software application that can be used for the ordering of loci on genetic linkage maps. The method is based on minimisation of the total number of recombination events. Since the criterion does not require intensive calculations, the algorithm rapidly produces an optimal ordering as well as a series of near-optimal ones. The latter provides insight into the local certainty of ordering along the map. RECORD can deal with the following types of mapping populations: BC1, F2, F3, RILs (in fact any generation obtained by repeated selfing of a hybrid between homozygous parents). Data files are .LOC JoinMap format. Mapping populations from non-inbreds should be split into BC1 or HAP data that represent the maternal and paternal gametes. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (win98, xp) and ms-dos | is listed by: Genetic Analysis Software | nlx_154153 | SCR_009097 | REcombination Counting and ORDering | 2026-02-13 10:56:19 | 1321 | ||||||||
|
TDT-AE Resource Report Resource Website 1+ mentions |
TDT-AE (RRID:SCR_009094) | TDT-AE | software resource, software application | Software program that computes a likelihood-based transmission disequilibrium test. The data are genotypes on trios (father, mother, affected child) in which random genotyping errors leading to Mendelian inconsistencies may or may not have occurred. This program computes the TDT-AE statistic on all trios (whether Mendelianly consistent or not) and thereby maintains a correct type I error rate in the presence of random genotyping errors. (entry from Genetic Analysis Software) | gene, genetic, genomic, c, ms-windows, (2000/dos), unix, (sun solaris), linux, (redhat) | is listed by: Genetic Analysis Software | PMID:11443542 | nlx_154112 | ftp://linkage.rockefeller.edu/software/tdtae2 | SCR_009094 | Transmission Disequilibrium Test Allowing for Errors | 2026-02-13 10:56:19 | 2 | ||||||
|
GENOMIZER Resource Report Resource Website 1+ mentions |
GENOMIZER (RRID:SCR_009127) | GENOMIZER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 6, 2016. A platform independent Java program for the analysis of genome wide association experiments. (entry from Genetic Analysis Software). | gene, genetic, genomic, java, ms-windows, linux | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154349 | http://www.ikmb.uni-kiel.de/genomizer/ | SCR_009127 | 2026-02-13 10:56:19 | 3 | |||||||
|
GENEPOOL Resource Report Resource Website 10+ mentions |
GENEPOOL (RRID:SCR_009087) | GENEPOOL | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that provides analysis tools for the detection of shifts in relative allele frequency between pooled genomic DNA from cases and controls using SNP-based genotyping microarrays. GenePool supports genotyping platforms from Affymetrix and Illumina. | gene, genetic, genomic, c/c++/perl, linux, macos, (should compile on most unix systems with gcc) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154104 | SCR_009087 | 2026-02-13 10:56:19 | 48 | ||||||||
|
ANALYZE Resource Report Resource Website 1000+ mentions |
ANALYZE (RRID:SCR_009120) | ANALYZE | software resource, software application | A set of useful accessory programs to the LINKAGE package. It simplifies the performance of a large array of parametric and nonparametric tests for linkage and association on data entered in LINKAGE format pedigree and parameter files. (entry from Genetic Analysis Software) | gene, genetic, genomic, pascal, unix, sunos, solaris, osf1 |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154223 | SCR_009120 | 2026-02-13 10:56:19 | 1102 | |||||||||
|
EPISTACY Resource Report Resource Website 1+ mentions |
EPISTACY (RRID:SCR_009088) | EPISTACY | software resource, software application | Software application (entry from Genetic Analysis Software) | gene, genetic, genomic, sas | is listed by: Genetic Analysis Software | nlx_154105 | SCR_009088 | 2026-02-13 10:56:19 | 1 | |||||||||
|
R/QTL Resource Report Resource Website 500+ mentions |
R/QTL (RRID:SCR_009085) | R/QTL | software resource, software application | Software program for mapping quantitative trait loci in experimental crosses. (entry from Genetic Analysis Software) | gene, genetic, genomic, c and r, unix, ms-windows, macos |
is listed by: Genetic Analysis Software is listed by: Debian is listed by: OMICtools |
DOI:10.1093/bioinformatics/btg112 | OMICS_07093, nlx_154097 | https://sources.debian.org/src/r-cran-qtl/ | SCR_009085 | 2026-02-13 10:56:18 | 987 | |||||||
|
QUANTO Resource Report Resource Website 500+ mentions |
QUANTO (RRID:SCR_009084) | QUANTO | software resource, software application | Software program that computes sample size or power for association studies of genes, environmental factors, gene-environment interaction, or gene-gene interaction. Available study designs for a disease (binary) outcome include the unmatched case-control, matched case-control, case-sibling, case-parent, and case-only designs. Study designs for a quantitative tra it include independent individuals and case parent designs. Quanto is a 32-bit Windows application requiring Windows 95, 98, NT, 2000, ME or XP to run. The graphical user interface allows th e user to easily change the model and view the results without having to edit an input file and rerun the program for every model. The results of a session are stored to a log file. This log can be printed or saved to a file for reviewing at a later date. An option is included to create a text file of the log that can be imported into other documents. (entry from Genetic Analysis Software) | gene, genetic, genomic, c++, ms-windows, (98/nt/2000/..) |
is listed by: Genetic Analysis Software is listed by: SoftCite |
nlx_154095 | SCR_009084 | 2026-02-13 10:56:18 | 915 | |||||||||
|
DGENE Resource Report Resource Website 1+ mentions |
DGENE (RRID:SCR_009158) | DGENE | software resource, software application | THIS RESOURCE IS NO LOGER IN SERVICE. Documented on May 16,2023. A simple dBASE III program for the management of pedigree and locus data. It permits easy extraction of genetic data for use with MENDEL and FISHER. (entry from Genetic Analysis Software) | gene, genetic, genomic, dbase iii, ms-dos | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LOGER IN SERVICE | nlx_154281 | SCR_009158 | 2026-02-13 10:56:20 | 5 | ||||||||
|
COPE Resource Report Resource Website 500+ mentions |
COPE (RRID:SCR_009153) | COPE | software resource, software application | Software application that includes a Java program for drawing pedigrees and a standardized system for pedigree storage. Unlike other existing pedigree programs, this software is particularly intended for epidemiologists in the sense that it allows customized automatic drawing of large numbers of pedigrees and remote and distributed consultation of pedigrees. (entry from Genetic Analysis Software) | gene, genetic, genomic, java |
is listed by: Genetic Analysis Software is parent organization of: COPE: Cytokines and Cells Online Pathfinder Encyclopaedia |
nlx_154274 | SCR_009153 | COllaborative Pedigree drawing Environment | 2026-02-13 10:56:20 | 841 | ||||||||
|
CHROMOSCAN Resource Report Resource Website 1+ mentions |
CHROMOSCAN (RRID:SCR_009151) | CHROMOSCAN | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. Software application that is an implementation of a genome-based scan statistic that detects genomic regions. | gene, genetic, genomic, java | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154270 | http://www.epidkardia.sph.umich.edu/software/chromoscan/ | SCR_009151 | 2026-02-13 10:56:20 | 2 | |||||||
|
CHIAMO Resource Report Resource Website 1+ mentions |
CHIAMO (RRID:SCR_009150) | CHIAMO | software resource, software application | Software application for calling genotypes from the Affymetrix 500K Mapping chip. The program allows for multiple cohorts which have potentially different intensity characteristics that can lead to elevated false-positive rates in genome-wide studies. The underlying model has a hierarchical structure that allows for correlation between the parameters of each cohort. The output files produced by CHIAMO feed directly into both the programs SNPTEST and IMPUTE. CHIAMO was used to call genotypes for the 7 genome-wide association studies carried out by the Wellcome Trust Case-Control Consortium (WTCCC). | gene, genetic, genomic | is listed by: Genetic Analysis Software | nlx_154269 | http://www.stats.ox.ac.uk/~marchini/software/gwas/chiamo.html | SCR_009150 | 2026-02-13 10:56:19 | 2 | ||||||||
|
CHECKMATRIX Resource Report Resource Website 1+ mentions |
CHECKMATRIX (RRID:SCR_009149) | CHECKMATRIX | software resource, software application | Software application that serves as a visualization tool to validate constructed genetic maps. CheckMatrix generates graphical genotypes and two-dimensional heat plots of pairwise scores. Visualization of regions with positive and negative linkage as well as of allele fraction per marker simplifies genetic map validation without applying statistical approaches. CheckMatrix works in conjunction with MadMapper and freely available at http://www.atgc.org/XLinkage/MadMapper/ (entry from Genetic Analysis Software) | gene, genetic, genomic, python | is listed by: Genetic Analysis Software | nlx_154268 | SCR_009149 | PY_MATRIX_D | 2026-02-13 10:56:19 | 9 | ||||||||
|
CFC Resource Report Resource Website |
CFC (RRID:SCR_009146) | CFC | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVCE, documented September 22, 2016. General-purpose program for monitoring genetic diversity. CFC allows for several pedigree analyses such as: (1) computing inbreeding coefficients and relationships; (2) computing average relationships very quickly within and between specified groups of individuals; (3) computing average relatedness; (4) ancestral decomposition of the average or the individual inbreeding coefficient; (5) ancestral decomposition of the average coancestry; (6) optimizing matings to minimize the average inbreeding coefficients in the next generation; (7) computing founder equivalent, founder genome equivalent and effective number of non-founders; (8) computing numerator relationship matrix, its Cholesky decomposition and its inverse; (9) providing useful information on the structure of pedigrees. | gene, genetic, genomic, visual c++, ms-windows, (98/nt/xp) | is listed by: Genetic Analysis Software | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154264 | SCR_009146 | Inbreeding (F) and Coancestry, Contribution | 2026-02-13 10:56:19 | 0 | |||||||
|
CEPH2MAP Resource Report Resource Website |
CEPH2MAP (RRID:SCR_009144) | CEPH2MAP | software resource, software application | Software application developed from crimap v2.4 for use with the map suite of programs. (entry from Genetic Analysis Software) | gene, genetic, genomic, c | is listed by: Genetic Analysis Software | nlx_154263 | SCR_009144 | 2026-02-13 10:56:19 | 0 | |||||||||
|
EVOKER Resource Report Resource Website 1+ mentions |
EVOKER (RRID:SCR_009145) | EVOKER | software resource, software application | A graphical tool for visualizing genotype intensity data in order to assess genotype calls as part of quality control procedures for genome-wide association studies. It provides a solution to the computational and storage problems related to being able to work with the huge volumes of data generated by such projects by implementing a compact, binary format that allows rapid access to data, even with hundreds of thousands of observations. (entry from Genetic Analysis Software) | gene, genetic, genomic, java, perl | is listed by: Genetic Analysis Software | nlx_154305 | SCR_009145 | 2026-02-13 10:56:19 | 8 | |||||||||
|
CCREL Resource Report Resource Website |
CCREL (RRID:SCR_009142) | CCREL | software resource, software application | Software program for case-control genetic analysis that takes relatedness between individuals into account. It will perform single-marker and haplotypic tests, however it will only work with SNP or other biallelic markers. (entry from Genetic Analysis Software) | gene, genetic, genomic, r, perl, c, unix, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian |
biotools:ccrel, nlx_154261 | https://bio.tools/ccrel | SCR_009142 | Case-Control association analysis with RELlated individuals | 2026-02-13 10:56:19 | 0 | |||||||
|
Feinstein Institute for Medical Research Resource Report Resource Website |
Feinstein Institute for Medical Research (RRID:SCR_004470) | Feinstein Institute | institution | The Feinstein Institute for Medical Research is the research branch of the North Shore-Long Island Jewish Health System. Biomedical research has been a vital aspect of its two academic medical centers North Shore University Hospital and Long Island Jewish Medical Center since their establishment in the early 1950''s. Through its connection to the hospital system, the Institute bridges the gap between biomedical research and patient care, accessing hundreds of thousands of patients in the health system''s 15 hospitals, four long-term care facilities, three trauma centers, six home health agencies and dozens of outpatient facilities. Institute scientists collaborate with clinicians throughout the system to shed light on basic biological processes underlying disease. This knowledge is used to develop new therapies and diagnostics. Currently, more than 800 scientists and investigators are conducting research in oncology, immunology and inflammation, genetics, psychiatry, neurology, pediatrics, surgery, urology, obstetrics/gynecology and many other specialties. In 2008, the Feinstein received funding from the National Institutes of Health in excess of $28 million, and an additional $10 million from other federal sources. Total annual research funding from all sources exceeded $44 million in 2008. We stand at the threshold of an extraordinary time in medicine. Over the last 100 years, biomedical science has progressed very rapidly. Advances coming from the integration of genomics, proteomics and bioinformatics into the biomedical toolkit hold the promise that this transformation will continue well into the 21st century. The Feinstein Institute for Medical Research is a growing force in research innovation, education and progress. | biomedical research, research |
is related to: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is parent organization of: Feinstein Biorepository is parent organization of: Biomarkers of Anti-TNF Treatment Efficacy in Rheumatoid Arthritis - Unresponsive Populations is parent organization of: Genetic Analysis Software |
NIH | ISNI: 0000 0000 9566 0634, Wikidata: Q7733638, grid.250903.d, nlx_143748 | https://ror.org/05dnene97 | SCR_004470 | Feinstein Institute | 2026-02-07 02:06:47 | 0 | ||||||
|
Iowa State University; Iowa; USA Resource Report Resource Website 1+ mentions |
Iowa State University; Iowa; USA (RRID:SCR_000972) | ISU | university | Iowa State University (ISU) is an undergraduate, graduate and research institute. ISU has 100 majors and upwards of 800 student organizations. | university, institution, undergraduate, graduate, research |
is parent organization of: Animal QTLdb is parent organization of: Arabidopsis thaliana Genome Database is parent organization of: BarleyBase is parent organization of: Iowa State University Neuroscience Program is parent organization of: SoyBase is parent organization of: FuncExpression is parent organization of: Zinc Finger Consortium Database is parent organization of: NAGRP Bioinformatics Coordination Program is parent organization of: PLEXdb - Plant Expression Database is parent organization of: CAP3 Sequence Assembly Program is parent organization of: PIDD is parent organization of: Metabolic Network Exchange is parent organization of: ChickBase is parent organization of: Picky is parent organization of: Iowa State University Labs and Facilities is parent organization of: Iowa State University SIPERG Stable Isotope Lab Core Facility is parent organization of: Genetic Analysis Software is parent organization of: Iowa State University Hybridoma Core Facility is parent organization of: Iowa State University W.M. Keck Metabolomics Research Laboratory Core Facility |
nlx_75450, Wikidata:Q1136919, Crossref funder ID:100009227, grid.34421.30, ISNI:0000 0004 1936 7312 | https://ror.org/04rswrd78 | SCR_000972 | Iowa State University, Iowa State University (ISU) | 2026-02-07 02:05:29 | 2 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
