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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Medpedia Resource Report Resource Website 1+ mentions |
Medpedia (RRID:SCR_004269) | narrative resource, data or information resource, wiki | Medpedia is an open platform connecting people and information to advance medicine. This wiki is the collaborative encyclopedia and resource for information about health, medicine and the body. Only physicians and Ph.D.s are allowed to edit the Articles on Medpedia after they create an account and are approved as an Editor. Non-Editors can create an account and then suggest changes that must be approved by an Editor before going live on the site. To suggest changes, click the link Suggest Changes at the top of Article Pages. Intended Uses and Benefits: * Reference source for both medical professionals and the lay-public covering information about health, medicine and the body * Forum for individuals and groups to be recognized for their areas of expertise * Clearinghouse of bio-medical journal articles, data, research, and educational materials * Forum for debating emerging issues * Platform for advancing medical knowledge Medpedia Portals - Adult Primary Care, Allergy and Immunology, Anatomy, Cardiology, Emergency Medicine, Endocrinology, Epidemiology, Gastroenterology and Hepatology, General Medicine, Infectious Diseases, Internal Medicine, Neurology & Neurobiology, Nutrition, OB/GYN and Reproductive Health, Oncology, Orthopedics, Pathology, Pediatrics, Pharmacology, Psychiatry, Public Health, Pulmonology, Rheumatology, Women''s Health In association with Harvard Medical School, Stanford School of Medicine, Berkeley School of Public Health, University of Michigan Medical School and other leading global health organizations, Medpedia will be a commons for the gathering of the information and people critical to health care. | Ooga Labs | nlx_28592 | SCR_004269 | 2026-02-14 02:00:57 | 4 | |||||||||||
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Alzheimer Society of Ireland Resource Report Resource Website |
Alzheimer Society of Ireland (RRID:SCR_004300) | Alzheimer Society of Ireland | nonprofit organization | The Alzheimer Society of Ireland is the leading dementia specific service provider in Ireland. The Society is a company limited by guarantee and a registered charity - CHY 7868. The Society was founded in 1982 by a small group of people who were caring for a family member with Alzheimer''s Disease or a related dementia. Today, it is a national voluntary organization with an extensive national network of branches, regional offices and services that aims to provide people with all forms of dementia, their families and carers with the necessary support to maximize their quality of life. As the major dementia-specific service provider in Ireland, The Society''s network includes over 100 dementia specific services such as day care centers, home care services, carer support groups, social clubs, a national respite center and an advocacy service. The Society also operates the Alzheimer National Helpline Service offering information and support to anyone affected by Alzheimer''s disease / dementia at 1800 341 341. For a full list of services in your area please see the We Can Help section. The Society comprises over 2,500 members, 300 volunteers and over 700 full and part-time staff. The Society has 6 regional offices and a network of Branches around the country. A number of core functions are operated through our national office including information, policy and research, fundraising, public relations, training and finance. | alzheimers disease, dementia | grid.496983.9, nlx_143672 | https://ror.org/00hv7e130 | SCR_004300 | Alzheimers Society of Ireland, Alzheimer''s Society of Ireland | 2026-02-14 02:00:42 | 0 | ||||||||
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SFARI - Simons Foundation Autism Research Initiative Resource Report Resource Website 50+ mentions |
SFARI - Simons Foundation Autism Research Initiative (RRID:SCR_004261) | SFARI | portal, data or information resource, funding resource, disease-related portal, topical portal | Launched in 2005, the Simons Foundation Autism Research Initiative (SFARI) is a research campaign within the Simons Foundation''s overall suite of programs. SFARI''s mission is to improve the diagnosis and treatment of autism spectrum disorders by funding, catalyzing and driving innovative research of the greatest quality and relevance. Although SFARI''s priority is to benefit individuals challenged by these disorders, its efforts are certain to yield insights into the neural mechanisms of fundamental human capabilities, thereby promoting the broader mission of the Simons Foundation to advance the frontiers of research in the basic sciences and mathematics. Autism spectrum disorders are a set of complex developmental disorders characterized by persistent deficits in social communication and interaction, as well as restricted behaviors, interests or activities. The Centers for Disease Control and Prevention estimates that roughly 1 in 110 children in the U.S. have autism, with many more boys affected than girls. These disorders cost the U.S. economy an estimated $35 billion dollars each year in direct care costs and lost productivity, and extract an incalculable human toll. | rfa, grant, autism spectrum disorder |
has parent organization: Simons Foundation is parent organization of: Simons Simplex Collection is parent organization of: AutDB |
nlx_27321 | https://sfari.org/web/sfari/ | SCR_004261 | Simons Foundation Autism Research Initiative | 2026-02-14 02:00:38 | 62 | |||||||
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Webvision - The Organization of the Retina and Visual System Resource Report Resource Website 10+ mentions |
Webvision - The Organization of the Retina and Visual System (RRID:SCR_004254) | Webvision | image collection, blog, data or information resource, book, narrative resource | Online textbook that has evolved into an interactive, dynamic blog that covers all things related to the bioscience of the visual system. It summarizes recent advances in knowledge and understanding of the visual system through dedicated chapters and evolving discussion to serve as a clearing house for all things related to retina and vision science. | eye, visual system, vision, retina, neuroanatomy | has parent organization: University of Utah School of Medicine; Utah; USA | nlx_26732 | SCR_004254 | Webvision - The Organization of the Retina Visual System | 2026-02-14 02:00:56 | 14 | ||||||||
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N-Browse Resource Report Resource Website |
N-Browse (RRID:SCR_004253) | software resource, web application | Interactive graphical browser for biological networks and molecular interaction data. The N-Browse server at NYU currently provides access to a variety of large-scale functional genomic datasets from several species. | graphical browser, molecular data interface, functional genomics | has parent organization: New York University; New York; USA | Department of the Army award W81XWH-04-1-0307; NYSTAR contract C040066 |
PMID:18819079 | Free, Account required | nlx_26609 | SCR_004253 | N-Browse.PNG, NBrowse | 2026-02-14 02:00:38 | 0 | ||||||
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Guthy-Jackson Charitable Foundation Resource Report Resource Website 1+ mentions |
Guthy-Jackson Charitable Foundation (RRID:SCR_004441) | Guthy-Jackson Charitable Foundation | funding resource | The Guthy-Jackson Charitable Foundation is dedicated to funding basic science research to find answers that will lead to the prevention, clinical treatment programs and a potential cure for Neuromyelitis Optica (NMO) Spectrum Disease. The decision to create our Foundation came from a personal family crisis. Our daughter was officially diagnosed with NMO in June 2008. Since that time, we have met with many clinicians and researchers in order to understand what this means for our beautiful daughter and our family. Additionally, we have gathered and read every piece of information and NMO research article that is available on the Web. We are now beginning to understand that NMO is not only considered an orphan disease, but that very little research is available. We met with the All Greater Good Foundation in early July 2008 when it became clear that there is little-to-no funding available to research this rare and often misunderstood disease. We joined hands with the All Greater Good Foundation to immediately begin our work, and thus, The Guthy-Jackson Charitable Foundation was born. The Guthy-Jackson Charitable Foundation is dedicated to funding biomedical research in the search to understand the pathophysiology and biochemistry of NMO Spectrum Disease. It is our greatest hope that together we will reverse the effects of NMO and eventually cure this disease. | is parent organization of: Guthy-Jackson Repository for Neuromyelitis Optica | nlx_43879 | SCR_004441 | 2026-02-14 02:00:44 | 1 | ||||||||||
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Taverna Resource Report Resource Website 10+ mentions |
Taverna (RRID:SCR_004437) | Taverna | software resource, workflow software, data processing software, software application | An open source and domain independent Workflow Management System ����?? a suite of tools used to design and execute scientific workflows and aid in silico experimentation. Taverna Workbench now has support for service sets, offline workflow editing, workflow validation, improved workflow run monitoring, and the pausing and canceling of workflow runs. The command line tool allows you to run workflows outside of the workbench and is available as a stand-alone download or bundled with the Taverna Workbench 2.2.0 download. The Taverna suite is written in Java and includes the Taverna Engine (used for enacting workflows) that powers both the Taverna Workbench (the desktop client application) and the Taverna Server (which allows remote execution of workflows). Taverna is also available as a Command Line Tool for a quick execution of workflows from a terminal. Taverna 2.2.0 includes * Copy/paste, shortcuts, undo/redo, drag and drop * Animated workflow diagram * Remembers added/removed services * Secure Web services support * Secure access to resources on the web * Up-to-date R support * Intermediate values during workflow runs * myExperiment integration * Excel and csv spreadsheet support * Command line tool |
is listed by: OMICtools is listed by: SoftCite is related to: myExperiment is related to: U-Compare is related to: Taverna Knowledge Blog is related to: AIDA Toolkit is related to: Knowledge Blog has parent organization: University of Manchester; Manchester; United Kingdom |
OMII-UK ; EPSRC ; BBSRC ; Microsoft ; ESRC ; JISC |
PMID:18337261 PMID:23640334 |
Open unspecified license | nlx_43462, OMICS_01146 | SCR_004437 | 2026-02-14 02:00:58 | 30 | |||||||
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dkCOIN Resource Report Resource Website 1+ mentions |
dkCOIN (RRID:SCR_004438) | dkCOIN | data or information resource, database, resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented October 13, 2014. The resource has moved to the NIDDKInformation Network (dkNET) project. Contact them at info_at_dknet.org with any questions. Database of large pools of data relevant to the mission of NIDDKwith the goal of developing a community-based network for integration across disciplines to include the larger DKuniverse of diseases, investigators, and potential users. The focus is on greater use of this data with the objective of adding value by breaking down barriers between sites to facilitate linking of different datasets. To date (2013/06/10), a total of 1,195 resources have been associated with one or more genes. Of 11,580 total genes associated with resources, the ten most represented are associated with 359 distinct resources. The main method by which they currently interconnect resources between the providers is via EntrezGene identifiers. A total of 780 unique genes provide the connectivity between 3,159 resource pairs across consortia. To further increase interconnectivity, the groups have been further annotating their data with additional gene identifiers, publications, and ontology terms from selected Open Biological and Biomedical Ontologies (OBO). | gene, adenovirus construct, antibody, co-immunoprecipitation, embryonic stem cell line, functional genomics, histology, mouse strain, pcr primer, protocol, real time pcr, metadata, diabetes, stem cell, metabolism, tissue development, web service, cloud, embryonic stem cell |
is used by: NIF Data Federation is related to: Beta Cell Biology Consortium is related to: NIDDK Information Network (dkNET) is related to: National Mouse Metabolic Phenotyping Centers is related to: Nuclear Receptor Signaling Atlas is related to: Diabetic Complications Consortium is related to: T1DBase is related to: OBO has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
NIDDK 3U01DK072473-05S3; NIDDK 5U24DK076169; NIDDK U19DK062434 |
PMID:22734043 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_44256 | SCR_004438 | NIDDKConsortium Interconnectivity Network | 2026-02-14 02:00:41 | 1 | |||||
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MPI Research Resource Report Resource Website 1+ mentions |
MPI Research (RRID:SCR_004397) | MPI | commercial organization | MPI Research exists to provide comprehensive discovery, safety evaluation, bioanalytical, and analytical services that meet the requirements of biopharmaceutical, medical device, animal health, and chemical companies as we partner globally to bring safer and more effective products to the world. Our goal is to exceed the expectations of our Sponsors and maintain the highest respect in our industry by providing customized, responsive, and on-time services that add value to our Sponsors'' efforts to discover, develop, and enhance products in regulated international environments. We excel as a high performance, high quality organization because of our scientific knowledge and experience, integrity, trust, teamwork, and dedication to strong and enduring Sponsor relationships. MPI Research has conducted thousands of drug safety, discovery, bioanalytical, and analytical studies. We offer extensive support and resources including, but not limited to * A wide and diverse range of classes of compounds * All routes of administration except inhalation * Studies with numerous species and models * Comprehensive reporting capabilities Flexibility and ample capacity enable us to * Accommodate multiple requirements simultaneously * Adjust schedules readily * Produce results quickly Responding to a broad spectrum of research needs: Working in partnership with pharmaceutical, biotech, medical device, and chemical companies, we conduct customized preclinical research throughout the discovery and development process, from early proof of concept testing to regulatory submissions, including IND, EPA/OPPTS, NDA, PMA, and 510K. | biomarker, metabolome, gc/ms/ms, contract research organization, bioanalytical services, cns biomarker | ISNI: 0000 0004 0445 7016, nlx_143716, grid.421937.a | https://ror.org/03dqpq202 | SCR_004397 | 2026-02-14 02:00:40 | 1 | |||||||||
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MAGNet - Multiscale Analysis of Genomic and Cellular Networks Resource Report Resource Website 1+ mentions |
MAGNet - Multiscale Analysis of Genomic and Cellular Networks (RRID:SCR_004399) | MAGNet | data or information resource, organization portal, portal, training resource | The mission of the Center for the Multiscale Analysis of Genomic and Cellular Networks (MAGNet) is to develop novel Structural and Systems Biology methods and tools for the dissection of molecular interactions in the cell and for the interaction-based elucidation of cellular phenotypes. These tools are made freely available to the the members of the research community. They are also validated in the context of the Center''''s own research program through collaborative projects with experimental biologists. MAGNet is one of 7 National Centers for Biomedical Computing (NCBC). These Centers, in conjunction with individual investigator awards, are creating a networked effort to build the computational infrastructure for biomedical computing in the nation. The NCBC program is devoted to all facets of biomedical computing, from basic research in computational science to providing the tools and resources that biomedical and behavioral researchers need to do their work. In addition to carrying out fundamental research the NCBCs play a major role in educating and training researchers to engage in biomedical computing. MAGNet is also one of 12 inter-disciplinary Centers for Cancer Systems Biology (CCSBs), a component of the National Cancer Institute''''s Integrative Cancer Biology Program. The CCSBs provide a core framework for applying systems biology approaches to cancer research through the development and implementation of computational models of processes relevant to cancer prevention, diagnostics and therapeutics. The CCSBs seek to integrate experimental biology with mathematical modeling to foster new insights in the biology and new approaches to the management of cancer. MAGNet''''s Training Core ensures that the methods developed by the Center are integrated into the educational offerings of Columbia University''''s Medical School. | cellular networks, cellular processes, biochemical interactions |
is related to: genomics Workbench is related to: National Centers for Biomedical Computing has parent organization: Columbia University; New York; USA |
nlx_40968 | SCR_004399 | Center for the Multiscale Analysis of Genomic and Cellular Networks | 2026-02-14 02:00:57 | 1 | ||||||||
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CAMO - Cell Adhesion Molecule Ontology Resource Report Resource Website 1+ mentions |
CAMO - Cell Adhesion Molecule Ontology (RRID:SCR_004392) | CAMO | data or information resource, ontology, controlled vocabulary | CAMO (Cell Adhesion Molecule Ontology) is a set of standard vocabulary that provide a hierarchical description of cell adhesion molecules and their functions. We compiled a list for cell adhesion molecules by integrating Gene Ontology annotations, domain structure information, and keywords query against NCBI Entrez Gene annotations. Totally 496 unique human genes were identified to function as cell adhesion molecules, which is by far the most comprehensive dataset including cadherin, immunoglobulin/FNIII, integrin, neurexin, neuroligan, and catenin families. CAMO was constructed as a directed acyclic graph (DAG) using DAG-Edit to input, manage and update data. We annotated each term with name, definition and source references, as well as the relationship to other terms, based on manual reviews of domain architecture and functional annotations. If vertices represent terms and the relationships between terms are represented by edges, the terms in a DAG can be connected via a directed graph without cycles. CAMO thus provides a hierarchical description of functions of CAMs with five top-level categories: CAM gene families, CAM genetics, CAM regulation, CAM expression and CAM diseases. Each top-level term is further divided into several categories to describe the functions in detail. | cell adhesion, molecule, function, cell adhesion molecule |
has parent organization: Peking University; Beijing; China has parent organization: OKCAM: Ontology-based Knowledgebase for Cell Adhesion Molecules |
NIDA | nlx_40219 | SCR_004392 | Cell Adhesion Molecule Ontology | 2026-02-14 02:00:43 | 2 | |||||||
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Biomedical Research Program UCA Resource Report Resource Website 1+ mentions |
Biomedical Research Program UCA (RRID:SCR_004395) | PIB | training resource, graduate program resource, portal, data or information resource, organization portal, degree granting program, undergraduate program resource | The Biomedical Research Program (PIB) of the School of Medical Sciences was created in 2007, after a Collaboration Protocol was established between UCA and the National Council of Scientific and Technical Research (CONICET). Research at PIB aims at unraveling the molecular, biochemical and genetic aspects of human diseases, therefore contributing to understanding complex pathologies. Research Groups include: * Molecular and Cell Biology Lab (LBCM) - Group leader: Tom��s A. Santa Coloma, Ph.D. * Nanotechnology Lab - Group leader: Tom��s A. Santa Coloma, Ph.D. * Molecular Neurobiology Lab - Group leader: Francisco J. Barrantes, Ph.D. | has parent organization: Pontifical Catholic University of Argentina School of Medical Sciences; Buenos Aires; Argentina | CONICET | nlx_143715 | SCR_004395 | Biomedical Research Institute UCA - CONICET, Biomedical Research Institute, UCA Biomedical Research Program, UCA PIB, Programa de Investigaciones Biom��dicas, Biomedical Research Institute UCA | 2026-02-14 02:00:58 | 5 | ||||||||
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Office of the NCI Director Resource Report Resource Website |
Office of the NCI Director (RRID:SCR_004391) | CO, | government granting agency | has parent organization: National Cancer Institute | SCR_004391 | National Cancer Institute Office of the Director | 2026-02-14 02:00:57 | 0 | |||||||||||
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Diagnostic Radiology Resource Report Resource Website 1+ mentions |
Diagnostic Radiology (RRID:SCR_004427) | Diagnostic Radiology | narrative resource, data or information resource, wiki | This is a wiki on diagnostic radiology. Major topics include General Types of Radiology, Imaging Modalities, Radiography, CT scanning, Sonography, MRI Magnetic Resonance Imaging, Nuclear medicine, Normal Radiological Anatomy, Imaging of Specific Anatomic Regions, Diagnosis of Specific Anatomic Regions, Imaging in Pediatric Radiology, and External resources. Radiology is the branch of medical science dealing with medical imaging. It may use x-ray machines or other such radiation devices. It also uses techniques that do not involve radiation, such as MRI and ultrasound. The medical information provided on Wikibooks is, at best, of a general nature and cannot substitute for the advice of a medical professional (for instance, a qualified doctor/physician, nurse, pharmacist/chemist, and so on). Wikibooks is not a doctor. | medical imaging, radiology, medicine, imaging | has parent organization: Wikibooks | nlx_42895 | SCR_004427 | 2026-02-14 02:00:57 | 2 | |||||||||
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King-Devick Test Resource Report Resource Website 1+ mentions |
King-Devick Test (RRID:SCR_004500) | King-Devick Test | material resource, assessment test provider, commercial organization | An accurate and reliable method for identifying athletes with head trauma, and a strong candidate rapid sideline screening test for concussion. The test is able to capture impairments of eye movement, attention, language and other symptoms of impaired brain function. It is a physical method of evaluating visual tracking and saccadic eye movements is based on the time to perform rapid number naming. It involves reading aloud a series of single digit numbers from left to right on three test cards. Participants are asked to read the numbers on each card from left to right as quickly as possible but without making any errors. The sum of the three test card time scores constitutes the summary score for the entire test. The test is a proven indicator of oculomotor inefficiencies regarding eye movements during reading. Published medical studies have determined that deficiencies in saccadic eye movements can be an indicator of mild Traumatic Brain Injury (mTBI) or concussions. Studies have shown that there is a significant relationship between poor oculomotor functions and learning disabilities (including dyslexia detection). Saccadic eye movement deficiencies can be improved with training and correspondingly reading performance also can be improved. Simply put, subjects who don''t perform well on this test are not efficient readers, although because there are many reasons for poor reading unrelated to eye movements, some poor readers do fine on the test. They believe that the test should be in the hands of teachers in order to help them determine if a student''s poor reading performance is related to deficiencies in their ability to move their eyes efficiently. | concussion, reading, dyslexia, traumatic brain injury, mild traumatic brain injury, screen, head trauma, human, one mind tbi, eye tracking device | Concussion, Dyslexia, Traumatic brain injury, Mild Traumatic Brain Injury, Head trauma | nlx_143775 | SCR_004500 | King Devick Test | 2026-02-14 02:00:59 | 1 | ||||||||
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Cell Sciences Resource Report Resource Website 1+ mentions |
Cell Sciences (RRID:SCR_004502) | commercial organization | An Antibody supplier | nlx_152329 | SCR_004502 | 2026-02-14 02:00:41 | 2 | ||||||||||||
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CEDARLANE Laboratories Limited Resource Report Resource Website 100+ mentions |
CEDARLANE Laboratories Limited (RRID:SCR_004462) | commercial organization | An Antibody supplier | nlx_152326 | SCR_004462 | CEDARLANE | 2026-02-14 02:00:57 | 100 | |||||||||||
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STAR Resource Report Resource Website 10000+ mentions |
STAR (RRID:SCR_004463) | data processing software, alignment software, software application, software resource, image analysis software | Software performing alignment of high-throughput RNA-seq data. Aligns RNA-seq reads to reference genome using uncompressed suffix arrays. | RNA-seq data, alignment, RNA-seq reads alignment, reference genome, using uncompressed suffix arrays, bio.tools |
is used by: STARsolo is listed by: OMICtools is listed by: Debian is listed by: bio.tools is listed by: SoftCite |
NHGRI U54 HG004557 | PMID:23104886 DOI:10.1093/bioinformatics/bts635 |
biotools:star, OMICS_01254, SCR_015899 | https://github.com/alexdobin/STAR https://bio.tools/star https://sources.debian.org/src/rna-star/ |
SCR_004463 | Spliced Transcripts Alignment to Reference, Spliced Transcripts Alignment to a Reference (STAR), rna-star, ultrafast universal RNA-seq aligner | 2026-02-14 02:00:44 | 22809 | ||||||
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Essential Tremor Centralized Brain Repository Resource Report Resource Website 1+ mentions |
Essential Tremor Centralized Brain Repository (RRID:SCR_004464) | ETCBR | biomaterial supply resource, material resource, tissue bank, brain bank | Finding a cure for any neurological disorder begins with the scientific study of the disorder''s causes, processes, and development in the brain. For essential tremor (ET), rigorous study of this kind had not been undertaken until 2003, when the Essential Tremor Centralized Brain Repository (ETCBR) was established at Columbia University. For the past five years, brain tissue from ET donors has been collected, processed and compared alongside age-matched control brains at the ETCBR, and already several significant findings have been made. However, there is still much to learn and a severe shortage of ET brains for scientific study. If you have been diagnosed with essential tremor, donating your brain tissue in the hours immediately after your death is of utmost importance in providing crucial information about what causes ET. Direct analysis of the shape and number of nerve cells and their content will provide medical researchers with the information they need in order to understand this complex illness. By advancing our medical knowledge of ET, the gift of brain tissue is a central piece of the puzzle in the search to develop better treatments and find a cure. | essential tremor, control, brain tissue, brain, tissue |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Columbia University; New York; USA |
Essential tremor, Control | NIH | nlx_143745 | SCR_004464 | 2026-02-14 02:00:58 | 3 | |||||||
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National Alliance for Medical Image Computing Resource Report Resource Website 1+ mentions |
National Alliance for Medical Image Computing (RRID:SCR_004460) | NA-MIC, NAMIC | portal, data set, data or information resource, organization portal, software resource, narrative resource, training material | The National Alliance for Medical Image Computing (NA-MIC) is a multi-institutional, interdisciplinary team of computer scientists, software engineers, and medical investigators who develop computational tools for the analysis and visualization of medical image data. The purpose of the Center is to provide the infrastructure and environment for the development of computational algorithms and open-source technologies, and then oversee the training and dissemination of these tools to the medical research community. Electronic resources provided by NA-MIC include software, data, tutorials, presentations, and more. | tutorial, brain, presentation, documentation, image, medical, computational tool, imaging |
is related to: National Centers for Biomedical Computing has parent organization: National Centers for Biomedical Computing is parent organization of: SPHARM-PDM Toolbox is parent organization of: SpineSegmentation module for 3DSlicer is parent organization of: NA-MIC Kit |
NIH | PMID:22081219 PMID:27498015 |
nlx_45301 | SCR_004460 | 2026-02-14 02:00:58 | 9 |
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