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http://purl.bioontology.org/ontology/CPT

Ontology of current procedural terminology.

Proper citation: Current Procedural Terminology (RRID:SCR_010301) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONTOAD

A bilingual (English-French) domain ontology for modeling knowledge about Alzheimer's Disease and Related Syndromes.

Proper citation: Bilingual Ontology of Alzheimer (RRID:SCR_010149) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ONL-DP

Ontology that is a module of the OntoNeuroLOG ontology, that covers the domain of Datasets and the processing of datasets developed in the context of the NeuroLOG project, a french project aiming at integrating distributed heterogeous resources in neuroimaging. It includes a detailed taxonomy of datasets in the area of neuroimaging (and especially MR imaging) as well as a taxonomy of medical image processing.

Proper citation: Dataset processing (RRID:SCR_010303) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BTO

A structured controlled vocabulary for the source of an enzyme. It comprises terms for tissues, cell lines, cell types and cell cultures from uni- and multicellular organisms.

Proper citation: BRENDA Tissue and Enzyme Source Ontology (RRID:SCR_010031) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/AI-RHEUM

Ontology used for the diagnosis of rheumatologic diseases. AI/RHEUM contains findings, such as clinical signs, symptoms, laboratory test results, radiologic observations, tissue biopsy results, and intermediate diagnosis hypotheses. Findings and hypotheses, which include definitions, are used to reach diagnostic conclusions with definite, probable, or possible certainty. AI/RHEUM is used by clinicians and informatics researchers.

Proper citation: Artificial Intelligence Rheumatology Consultant System Ontology (RRID:SCR_010274) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/LSM

An ontology of CD markers for lymphocyte classification in the cell ontology, and other categories of surface and secreted proteins useful for discriminating between lymphocyte subsets by flow cytometry, ELISPOT, ELISA and other assays typically used for phenotypic identification of individual lymphocytes or lymphocyte populations have been included.

Proper citation: Leukocyte Surface Marker Ontology (RRID:SCR_010275) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/IFAR

An application ontology devoted to the standardized recording of data related to Fanconi Anemia (FA). This ontology was created using an OWL file provided by Dr. Ada Hamish (and Francois Schiettecatte) at the Centers for Mendelian Genetics, with their permission. Their original ontology can be found at: http://phenodb.net/help/features. Modifications were made using HPO, OMIM, NCI, and SNOMED. Novel classes pertaining to FA were added and defined as appropriate.

Proper citation: Fanconi Anemia Ontology (RRID:SCR_010319) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ECG

Ontology for describing electrocardiograms, their capture method(s) and their waveforms.

Proper citation: Electrocardiography Ontology (RRID:SCR_010313) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/CMPO

A species neutral ontology for describing general phenotypic observations relating to the whole cell, cellular components, cellular processes and cell populations. CMPO is an application ontology developed in OWL that contains precomposed phenotypes descriptions that are defined using the Gene Ontology (GO) and the Phenotype Trait Ontology (PATO).

Proper citation: Cellular microscopy phenotype ontology (RRID:SCR_010282) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ABA-AMB

Allen Brain Atlas P56 Mouse Ontology

Proper citation: ABA Adult Mouse Brain Ontology (RRID:SCR_010286) Copy   

•   Source: SciCrunch Registry

http://www.obofoundry.org/wiki/index.php/AEO:Main_Page

An ontology of anatomical structures that expands CARO, the Common Anatomy Reference Ontology, to about 200 classes using the is_a relationship; it thus provides a detailed type classification for tissues. The new classes were chosen for their use in categorizing the major vertebrate and invertebrate anatomy ontologies at a granularity adequate for tissues of a single cell type. The ontology should be useful in increasing the amount of knowledge in anatomy ontologies, facilitating annotation and enabling interoperability across anatomy ontologies

Proper citation: AEO (RRID:SCR_010287) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/ATMO

Ontology that describes the actors'' function (healer, fetishist or soothsayer); the different types of proposed process treatment, the symptom''s roles and the disease consideration.

Proper citation: African Traditional Medicine Ontology (RRID:SCR_010288) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/BRIDG

An instance of a Domain Analysis Model (DAM) with the goal of producing a shared view of the dynamic and static semantics for the domain of protocol-driven research and its associated regulatory artifacts. This domain of interest is further defined as: Protocol-driven research and its associated regulatory artifacts: i.e. the data, organization, resources, rules, and processes involved in the formal assessment of the utility, impact, or other pharmacological, physiological, or psychological effects of a drug, procedure, process, or device on a human, animal, or other subject or substance plus all associated regulatory artifacts required for or derived from this effort, including data specifically associated with post-marketing adverse event reporting. The Biomedical Research Integrated Domain Group (BRIDG) Model is a collaborative effort engaging stakeholders from the Clinical Data Interchange Standards Consortium (CDISC), the HL7 Regulated Clinical Research Information Management Technical Committee (RCRIM TC), the National Cancer Institute (NCI) and its Cancer Biomedical Informatics Grid (caBIG??), and the US Food and Drug Administration (FDA). Source repository: https://ncisvn.nci.nih.gov/WebSVN/listing.php?repname=bridg-model&path=%2Ftrunk%2FModel+-+OWL%2F&

Proper citation: Biomedical Research Integrated Domain Group Model (RRID:SCR_010265) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VHOG

A multi-species anatomical ontology for the vertebrate lineage, developed as part of the Bgee project. The mapping to species-specific anatomical ontologies is provided as a separated file: http://bgee.unil.ch/download/organ_association_vHOG.txt This mapping represents homology-strict relationships, in the sense of HOM:0000007 historical homology. Each mapping has been manually reviewed, and theye provide confidence codes and references when available.

Proper citation: Vertebrate Homologous Organ Group Ontology (RRID:SCR_010444) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VANDF, NDF

Ontology that includes information on clinical drugs, drug classes, ingredients and National Drug Code (NDC) Directory codes.

Proper citation: Veterans Health Administration National Drug File (RRID:SCR_010445) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/VSO

An extension of the Ontology for General Medical Science (OGMS) that covers the four consensus human vital signs: blood pressure, body temperature, respiration rate, pulse rate. VSO provides also a controlled structured vocabulary for describing vital signs measurement data, the various processes of measuring vital signs, and the various devices and anatomical entities participating in such measurements.

Proper citation: Vital Sign Ontology (RRID:SCR_010446) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/WHO-ART

Ontology of the WHO adverse reaction terminology, 1997.

Proper citation: WHO Adverse Reaction Terminology (RRID:SCR_010447) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/SuicidO

Ontology of suicidology.

Proper citation: suicideo (RRID:SCR_010451) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GENE-CDS

Ontology to unify several functionalities in a single resource, being: * A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?) * A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians) * A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients)

Proper citation: Genomic Clinical Decision Support Ontology (RRID:SCR_010331) Copy   

•   Source: SciCrunch Registry

http://purl.bioontology.org/ontology/GEOSPECIES

Ontology to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org

Proper citation: GeoSpecies Ontology (RRID:SCR_010332) Copy   

•   Source: SciCrunch Registry