Tools   Select Another Resource Report Type

https://rupertoverall.net/ColonyTrack/

Software R package to process raw data from ColonyRack system. In addition to generating pre processed data and quality control information, range of high level metrics are calculated together with convenient tools for analysis.

Proper citation: ColonyTrack (RRID:SCR_023026) Copy   

•   Source: SciCrunch Registry

https://github.com/borglandlab/RunningWheel/

Open source, printable, open faced running wheels for mice residing in home cage that is automated to collect locomotor information such as distance traveled, wheel direction, and velocity. Running wheel system available on GitHub contains code and information to create and run running wheels. System consists of 3D printed wheel, Raspberry Pi 0 W, and supporting components.

Proper citation: Open Face Homecage Running Wheel (RRID:SCR_023642) Copy   

•   Source: SciCrunch Registry

https://github.com/namboodirilab/B-CALM

Open source system for behavioral control based on Arduino Mega microcontroller and MATLAB based graphical interface and analysis code. Behavior controller optimized and customized for associative learning and memory tasks. Provided software should be able to control many different types of hardware for different task configurations.

Proper citation: B-CALM (RRID:SCR_023884) Copy   

•   Source: SciCrunch Registry

https://bitbucket.org/kloostermannerflab/

Open source software tool for closed loop neuroscientific experiments capable of sub-millisecond response latency over high-rate streaming data acquired from high-count multi-electrode arrays. Used for processing and controlling closed-loop neuroscience data.

Proper citation: Falcon (RRID:SCR_023199) Copy   

•   Source: SciCrunch Registry

https://github.com/TomGeorge1234/RatInABox

Software Python toolkit for modelling locomotion and neuronal activity in continuous environments. Used to model realistic rodent locomotion and generate synthetic electrophysiological data from spatially modulated cell types.

Proper citation: RatInABox (RRID:SCR_023682) Copy   

•   Source: SciCrunch Registry

https://github.com/vivian-imbriotis/rpg

Software Python package written for Raspberry Pi for displaying visual stimuli and to provide real time feedback on stimulus timing. High performance python library for displaying drifting gratings on Raspberry Pi 3.

Proper citation: Raspberry Pi Grating (RRID:SCR_023157) Copy   

•   Source: SciCrunch Registry

https://github.com/KimchiLab/OpBoxPhys

Open source electrophysiology hardware and software package for simultaneous EEG and EMG acquisition from multiple subjects.

Proper citation: OpBox (RRID:SCR_023269) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/dual-port-lick-detector/

Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector.

Proper citation: Dual port Lick Detector project (RRID:SCR_021454) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cerebro/

Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands.

Proper citation: Cerebro Wireless Optogenetic System project (RRID:SCR_021474) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/4-port-nose-poke/

Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments.

Proper citation: 4 Port Nose Poke (RRID:SCR_021592) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-platform-sensory-tasks/

Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists.

Proper citation: Open Source platform for Sensory Tasks project (RRID:SCR_021468) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/mri-compatible-microdrive/

MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts.

Proper citation: MRI Compatible Microdrive (RRID:SCR_022352) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/neonatal-stereotax/

3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice.

Proper citation: Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/led-matrix-stimuli/

Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project.

Proper citation: LED Matrix Stimuli (RRID:SCR_022345) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/clara/

Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency.

Proper citation: Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/tweetynet/

Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables.

Proper citation: TweetyNet (RRID:SCR_022360) Copy   

•   Source: SciCrunch Registry

https://cellexplorer.org/

Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

Proper citation: CellExplorer (RRID:SCR_022358) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/pycro-manager/

Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing.

Proper citation: Pycro Manager (RRID:SCR_022356) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/cellpose/

Software tool as generalist algorithm for cell and nucleus segmentation.

Proper citation: Cellpose (RRID:SCR_022332) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/compass/

Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios.

Proper citation: COMPASS (RRID:SCR_022329) Copy   

•   Source: SciCrunch Registry