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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Gene Ontology Extension Resource Report Resource Website |
Gene Ontology Extension (RRID:SCR_010327) | GO-EXT | data or information resource, ontology, controlled vocabulary | An extension of the Gene Ontology. | obo |
is listed by: BioPortal has parent organization: Gene Ontology |
nlx_157414 | SCR_010327 | 2026-02-14 02:01:57 | 0 | |||||||||
|
suicideo Resource Report Resource Website |
suicideo (RRID:SCR_010451) | SuicidO | data or information resource, ontology, controlled vocabulary | Ontology of suicidology. | owl | is listed by: BioPortal | nlx_157632 | SCR_010451 | 2026-02-14 02:01:59 | 0 | |||||||||
|
Genomic Clinical Decision Support Ontology Resource Report Resource Website |
Genomic Clinical Decision Support Ontology (RRID:SCR_010331) | GENE-CDS | data or information resource, ontology, controlled vocabulary | Ontology to unify several functionalities in a single resource, being: * A knowledge base for clinical pharmacogenomics/pharmacogenetics that can be used for question-answering (e.g., which SNPs are associated with this drug?) * A rule base for clinical decision support (e.g., inferring that a patient with a specific set of SNPs requires a lowered dose of warfarin and generating a CDS message that can be viewed by clinicians) * A tool for checking data consistency (e.g., highlighting which allele definitions in PharmGKB are overlapping, or which clinical decision support rules are matching the same group of patients) | owl | is listed by: BioPortal | nlx_157419 | SCR_010331 | Genomic CDS ontology | 2026-02-14 02:01:57 | 0 | ||||||||
|
GeoSpecies Ontology Resource Report Resource Website |
GeoSpecies Ontology (RRID:SCR_010332) | GEOSPECIES | data or information resource, ontology, controlled vocabulary | Ontology to help integrate species concepts with species occurrences, gene sequences, images, references and geographical information. See also Taxonconcept.org | owl | is listed by: BioPortal | nlx_157420 | SCR_010332 | 2026-02-14 02:01:44 | 0 | |||||||||
|
Pseudogene Resource Report Resource Website 100+ mentions |
Pseudogene (RRID:SCR_010453) | pseudo | data or information resource, ontology, controlled vocabulary | Ontology for pseudogenes including biological feature, classified type, Evidence code, and subcellular origin. | obo | is listed by: BioPortal | nlx_157640 | SCR_010453 | 2026-02-14 02:02:00 | 141 | |||||||||
|
Terminology for the Description of Dynamics Resource Report Resource Website 1+ mentions |
Terminology for the Description of Dynamics (RRID:SCR_010454) | TEDDY | data or information resource, ontology, controlled vocabulary | Ontology for dynamical behaviors, observable dynamical phenomena, and control elements of bio-models and biological systems in Systems Biology and Synthetic Biology. | Ontology for dynamical behaviors, Systems Biology, Synthetic Biology, ontology, owl, dynamical behaviors, observable dynamical phenomena, control elements, bio-models and biological systems | is listed by: BioPortal | nlx_157641 | http://purl.bioontology.org/ontology/MO | SCR_010454 | 2026-02-14 02:02:00 | 9 | ||||||||
|
Health Indicator Ontology Resource Report Resource Website |
Health Indicator Ontology (RRID:SCR_010335) | HLTHINDCTRS | data or information resource, ontology, controlled vocabulary | Ontology for standardized health outcome and health determinant indicators as maintained by the CDC National Center for Health Statistics. | owl | is listed by: BioPortal | nlx_157424 | SCR_010335 | 2026-02-14 02:01:56 | 0 | |||||||||
|
Health Level Seven Reference Implementation Model Version 3 Resource Report Resource Website |
Health Level Seven Reference Implementation Model Version 3 (RRID:SCR_010336) | HL7 | data or information resource, ontology, controlled vocabulary | Ontology for the data types used in the creation of HL7 (Health Level Seven International) V3 specifications. This version is the first update to Normative RIM, Release 3. It is based on changes approved in Harmonization in November 2010. This release of the RIM is bound to HL7 Abstract Data Types Release 2. https://www.hl7.org/implement/standards/product_brief.cfm?product_id=264 | owl |
is listed by: BioPortal has parent organization: Health Level Seven International |
nlx_157425 | SCR_010336 | 2026-02-14 02:01:57 | 0 | |||||||||
|
Human Interaction Network Ontology Resource Report Resource Website |
Human Interaction Network Ontology (RRID:SCR_010339) | HINO | data or information resource, ontology, controlled vocabulary | An Interaction Network Ontology (INO) extension for the domain of human interaction networks. It has currently incoporated Reactome reactions and pathways. Like INO, HINO aligns with BFO. HINO is developed by following the OBO Foundry principles. | owl | is listed by: BioPortal | nlx_157433 | SCR_010339 | 2026-02-14 02:01:57 | 0 | |||||||||
|
IMGT-ONTOLOGY Resource Report Resource Website |
IMGT-ONTOLOGY (RRID:SCR_010342) | IMGT-ONTOLOGY | data or information resource, ontology, controlled vocabulary | Ontology for immunogenetics and immunoinformatics. Provides semantic specification of terms to be used in immunogenetics and immunoinformatics and manages related knowledge, thus allowing standardization for immunogenetics data from genome, proteome, genetics, two-dimensional (2D) and three-dimensional (3D) structures. Manages the knowledge through diverse facets relying on seven axioms, IDENTIFICATION, CLASSIFICATION, DESCRIPTION, NUMEROTATION, LOCALIZATION, ORIENTATION and OBTENTION. These axioms postulate that any object, any process and any relation can be identified, classified, described, numbered, localized and orientated, and the way it is obtained can be characterized. The axioms constitute the Formal IMGT-ONTOLOGY, also designated as IMGT-Kaleidoscope. As the same axioms can be used to generate concepts for multi-scale level approaches, the Formal IMGT-ONTOLOGY represents a paradigm for system biology ontologies, which need to identify, to classify, to describe, to number, to localize and to orientate objects, processes and relations at the molecule, cell, tissue, organ, organism or population levels. IMGT, the international ImMunoGeneTics information system, has been built on IMGT-ONTOLOGY. The version 1.0.2 of IMGT-ONTOLOGY includes the concepts of IDENTIFICATION and the concepts of CLASSIFICATION. | owl, ontology, immunogenetics, immunoinformatics, terms semantic specification, bio.tools |
is listed by: BioPortal is listed by: Debian is listed by: bio.tools has parent organization: IMGT - the international ImMunoGeneTics information system |
Free, Freely available | nlx_157436, biotools:IMGt-ONtOLOGY | http://www.imgt.org/IMGTindex/ontology.php https://bio.tools/IMGT-ONTOLOGY |
SCR_010342 | 2026-02-14 02:01:44 | 0 | |||||||
|
Image and Data Quality Assessment Ontology Resource Report Resource Website 1+ mentions |
Image and Data Quality Assessment Ontology (RRID:SCR_010343) | IDQA | data or information resource, ontology, controlled vocabulary | Ontology for Image and Data Quality Assessment for scientific data management. | obo | is listed by: BioPortal | nlx_157437 | SCR_010343 | 2026-02-14 02:01:56 | 4 | |||||||||
|
Symptom Ontology Resource Report Resource Website |
Symptom Ontology (RRID:SCR_010388) | SYMP | data or information resource, ontology, controlled vocabulary | Ontology designed around the guiding concept of a symptom being: A perceived change in function, sensation or appearance reported by a patient indicative of a disease. Understanding the close relationship of Signs and Symptoms, where Signs are the objective observation of an illness, the Symptom Ontology will work to broaden it''s scope to capture and document in a more robust manor these two sets of terms. Understanding that at times, the same term may be both a Sign and a Symptom | owl | is listed by: BioPortal | nlx_157599 | SCR_010388 | 2026-02-14 02:01:45 | 0 | |||||||||
|
STATistics Ontology Resource Report Resource Website |
STATistics Ontology (RRID:SCR_010421) | STATO | data or information resource, ontology, controlled vocabulary | A general-purpose STATistics Ontology to provide coverage for processes such as statistical tests, their conditions of applications, and information needed or resulting from statistical methods, such as probability distributions, variable, spread and variation metrics. STATO also covers aspects of experimental design and description of plots and graphical representations commonly used to provide visual cues of data distribution or layout and to assist review of the results. | owl | is listed by: BioPortal | nlx_157579 | SCR_010421 | 2026-02-14 02:01:58 | 0 | |||||||||
|
Sage Bionetworks Synapse Ontology Resource Report Resource Website |
Sage Bionetworks Synapse Ontology (RRID:SCR_010422) | SYN | data or information resource, ontology, controlled vocabulary | Controlled vocabulary used for various entity properties in the Synapse platform. | owl | is listed by: BioPortal | nlx_157580 | SCR_010422 | 2026-02-14 02:01:59 | 0 | |||||||||
|
Sample Processing and Separation Techniques Ontology Resource Report Resource Website |
Sample Processing and Separation Techniques Ontology (RRID:SCR_010423) | SEP | data or information resource, ontology, controlled vocabulary | A structured controlled vocabulary for the annotation of sample processing and separation techniques in scientific experiments, such as, and including, gel electrophoresis, column chromatography, capillary electrophoresis, centrifugation and so on. Developed jointly by the HUPO Proteomics Standards Initiative and The Metabolomics Standards Initiative. | obo |
is listed by: BioPortal has parent organization: HUPO Proteomics Standards Initiative |
nlx_157581 | SCR_010423 | 2026-02-14 02:01:59 | 0 | |||||||||
|
Ontology of Biological and Clinical Statistics Resource Report Resource Website 1+ mentions |
Ontology of Biological and Clinical Statistics (RRID:SCR_010391) | OBCS | data or information resource, ontology, controlled vocabulary | A biomedical ontology in the domain of biological and clinical statistics that is primarily targeted for statistical representation in the fields in biological, biomedical, and clinical domains. It uses the Basic Formal Ontology (BFO) as the upper level ontology. OBCS imports all biostatistics related terms in the Ontology for Biomedical Investigations (OBI) including all logical axioms. | owl | is listed by: BioPortal | nlx_157524 | SCR_010391 | 2026-02-14 02:01:58 | 1 | |||||||||
|
Ontology of Clinical Research Resource Report Resource Website 1+ mentions |
Ontology of Clinical Research (RRID:SCR_010392) | OCRE | data or information resource, ontology, controlled vocabulary | Ontology to support systematic description of, and interoperable queries on, human studies and study elements. | owl | is listed by: BioPortal | nlx_157525 | SCR_010392 | 2026-02-14 02:01:45 | 1 | |||||||||
|
Taxonomic Rank Vocabulary Resource Report Resource Website |
Taxonomic Rank Vocabulary (RRID:SCR_010430) | TAXRANK | data or information resource, ontology, controlled vocabulary | A vocabulary of taxonomic ranks intended to replace the sets of rank terms found in the Teleost Taxonomy Ontology, the OBO translation of the NCBI taxonomy and similar OBO taxonomy ontologies. It provides terms for taxonomic ranks drawn from both the NCBI taxonomy database and from a rank vocabulary developed for the TDWG biodiversity information standards group. Cross references to appearances of each term in each source are provided. Consistent with its intended use as a vocabulary of labels, there is no relation specifying an ordering of the rank terms. | obo | is listed by: BioPortal | nlx_157606 | SCR_010430 | 2026-02-14 02:01:46 | 0 | |||||||||
|
Ontology of Geographical Region Resource Report Resource Website |
Ontology of Geographical Region (RRID:SCR_010398) | OGR | data or information resource, ontology, controlled vocabulary | Ontology that is used with other ontologies to represent the genetic susceptibility factors of diabetes. This OWL ontology classified the geograhical regions related vocabularies extracted from UMLS. | owl | is listed by: BioPortal | Diabetes | nlx_157530 | SCR_010398 | 2026-02-14 02:01:57 | 0 | ||||||||
|
Taxonomy for Rehabilitation of Knee Conditions Resource Report Resource Website |
Taxonomy for Rehabilitation of Knee Conditions (RRID:SCR_010431) | TRAK | data or information resource, ontology, controlled vocabulary | Ontology that formally models information relevant for the rehabilitation of knee conditions. It provides the framework that can be used to collect coded data in sufficient detail to support epidemiologic studies so that the most effective treatment components can be identified, new interventions developed and the quality of future randomized control trials improved to incorporate a control intervention that is well defined and reflects clinical practice. | obo | is listed by: BioPortal | nlx_157607 | SCR_010431 | 2026-02-14 02:01:58 | 0 |
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