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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
neurosphere
 
Resource Report
Resource Website
10+ mentions
neurosphere (RRID:SCR_005478) Neurosphere data or information resource, narrative resource, blog This blog belongs to me, Dave J Hayes PhD, a Neuroscientist at the University of Ottawa''s Institute of Mental Health Research. My research focuses on the neuroscience of motivation and emotion particularly regarding how brains and people respond to aversive and rewarding things in their environment. A neurosphere is a free-floating group of neural stem cells which can multiply, outside of their natural environment, and retain the ability to differentiate into functional brain cells. I don''t work on neurospheres. However, i like the metaphor of a group of people coming together, outside of their natural environment, through their interest in all things neuro which, incidentally, is everything. The sphere of human thought. neuroscience, brain, environment, motivation, emotion, adverse event, reward has parent organization: WordPress nlx_144600 SCR_005478 neurosphere - neuroscience in everything 2026-02-14 02:05:56 23
ScienceBlogs
 
Resource Report
Resource Website
1+ mentions
ScienceBlogs (RRID:SCR_005197) Sb data or information resource, narrative resource, blog, database From climate change to intelligent design, HIV/AIDS to stem cells, science education to space exploration, science is figuring prominently in our discussions of politics, religion, philosophy, business and the arts. New insights and discoveries in neuroscience, theoretical physics and genetics are revolutionizing our understanding of who are are, where we come from and where we''re heading. Launched in January 2006, ScienceBlogs is a portal to this global dialogue, a digital science salon featuring the leading bloggers from a wide array of scientific disciplines. Today, ScienceBlogs is the largest online community dedicated to science. We believe in providing our bloggers with the freedom to exercise their own editorial and creative instincts. We do not edit their work and we do not tell them what to write about. We have selected our 80+ bloggers based on their originality, insight, talent, and dedication and how we think they would contribute to the discussion at ScienceBlogs. Our role, as we see it, is to create and continue to improve this forum for discussion, and to ensure that the rich dialogue that takes place at ScienceBlogs resonates outside the blogosphere. ScienceBlogs is always interested in bringing new contributors into our community. If you''re interested in blogging with us, please fill out our application, and we''ll be in touch. science, life science, physical science, environment, humanities, education, politics, medicine, brain, behavior, technology, information science, job, peer review is parent organization of: ScienceBlogs: Life Science
is parent organization of: ScienceBlogs: Brain and Behavior
is parent organization of: ScienceBlogs: Medicine and Health
is parent organization of: ScienceBlogs: Jobs
is parent organization of: Neurophilosophy
is parent organization of: ScienceBlogs Neurotopia
is parent organization of: Common Knowledge
is parent organization of: Cognitive Daily
nlx_144212 SCR_005197 2026-02-14 02:05:52 6
sfnvideo - YouTube
 
Resource Report
Resource Website
sfnvideo - YouTube (RRID:SCR_005463) SFNVideo - YouTube data or information resource, video resource The Society for Neuroscience (SfN) is a nonprofit membership organization of scientists and physicians who study the brain and nervous system. SFNVideo - YouTube are videos uploaded to YouTube by the Society for Neuroscience (SfN). Since inception in 1969, the Society has grown from 500 members to more than 41,000. Today, SfN is the world''s largest organization of scientists and physicians devoted to advancing understanding of the brain and nervous system. neuroscience, brain, nervous system has parent organization: Society for Neuroscience nlx_144583 SCR_005463 Society for Neuroscience Video - YouTube 2026-02-14 02:05:56 0
Laboratory of Neuro Imaging - YouTube
 
Resource Report
Resource Website
Laboratory of Neuro Imaging - YouTube (RRID:SCR_005462) loniucla - YouTube data or information resource, video resource Videos uploaded to YouTube by the Laboratory of Neuro Imaging (LONI). The Laboratory of Neuro Imaging at UCLA strives to improve our understanding of the brain in health and disease. LONI is a leader in the development of advanced computational algorithms and scientific approaches for the comprehensive and quantitative mapping of brain structure and function. human, mouse, brain, health, disease, brain structure, brain function nlx_144582 http://www.youtube.com/user/loniucla SCR_005462 LONI - YouTube 2026-02-14 02:06:24 0
Atlas of the Brain
 
Resource Report
Resource Website
1+ mentions
Atlas of the Brain (RRID:SCR_005967) Atlas of the Brain data or information resource, atlas On line labeled atlas of the human brain developed by Dr. Rand Swenson of Dartmouth Medical School. It includes gross anatomical and MRI-generated slices (Axial T1-weighted MRI and Coronal T2 MRI weighted, along with Magnetic resonance arteriogram (MRA) and Magnetic resonance venogram (MRV)images. Labels may be turned on and off. A companion on-line textbook is also available. The site says it is still under construction, although the copyright is 2009. * Atlas of Gross Brain Topography * Atlas of the Brain Stem in Cross Section * Atlas of the Brain in Axial Slices * Atlas of the Brain in Coronal Slices * Atlas of the Head in Axial Slices * Axial T1-weighted MRI * Axial T2-weighted MRI * Coronal T1 MRI * Coronal T2 MRI * Magnetic resonance arteriogram (MRA) * Magnetic resonance venogram (MRV) brain, magnetic resonance imaging, magnetic resonance venogram, magnetic resonance arteriogram, brainstem, radiographic anatomy, axial, coronal is related to: Review of Clinical and Functional Neuroscience
is related to: Review of Clinical and Functional Neuroscience
has parent organization: Dartmouth Medical School; New Hampshire; USA
nlx_151327 SCR_005967 Atlas of the Brain - Structure with functional correlates 2026-02-14 02:05:58 1
brainhack.org
 
Resource Report
Resource Website
1+ mentions
brainhack.org (RRID:SCR_000195) brainhack.org data or information resource, portal Forum for collaborative projects in the field of brain science. Everyone is invited to submit projects, either existing ones that you want to see featured or new ones that you want launch and work on in a collaborative, open way. magnetic resonance imaging assay, image, fmri, brain, science, neuroimaging, project is affiliated with: HBM Hackathon
has parent organization: Neuro Bureau
PMID:27042293
PMID:33932337
The community can contribute to this resource nlx_149390 SCR_000195 BrainHack 2026-02-14 02:05:12 1
Center for the Neural Basis of Cognition
 
Resource Report
Resource Website
10+ mentions
Center for the Neural Basis of Cognition (RRID:SCR_002301) data or information resource, organization portal, portal CNBC is joint venture of University of Pittsburgh and Carnegie Mellon University. Our center leverages the strengths of the University of Pittsburgh in basic and clinical neuroscience and those of Carnegie Mellon in cognitive and computational neuroscience to support a coordinated cross-university research and educational program of international stature. In addition to our Ph.D. program in Neural Computation, we sponsor a graduate certificate program in cooperation with a wide variety of affiliated Ph.D. programs. brain, cognition, cognitive abilities, development, disorders, human, human thought, learning, mind, multidisciplinary, neural activity, neural mechanisms, neurobasis, normal, training has parent organization: Carnegie Mellon University; Pennsylvania; USA nif-0000-00370 SCR_002301 CNBC 2026-02-14 02:05:02 16
Neural ElectroMagnetic Ontologies (NEMO) Project
 
Resource Report
Resource Website
10+ mentions
Neural ElectroMagnetic Ontologies (NEMO) Project (RRID:SCR_002001) NEMO data or information resource, portal, project portal THIS RESOURCE IS NO LONGER IN SERVICE. NIH tombstone webpage lists Project Period : 2009 - 2013. NIH funded project to create EEG and MEG ontologies and ontology based tools. These resources will be used to support representation, classification, and meta-analysis of brain electromagnetic data. Three pillars of NEMO are: DATA, ONTOLOGY, and DATABASE. NEMO data consist of raw EEG, averaged EEG (ERPs), and ERP data analysis results. NEMO ontologies include concepts related to ERP data (including spatial and temporal features of ERP patterns), data provenance, and cognitive and linguistic paradigms that were used to collect data. NEMO database portal is large repository that stores NEMO consortium data, data analysis results, and data provenance. EEG and MEG ontologies and ontology-based tools to support representation, classification, and meta-analysis of brain electromagnetic data. Raw EEG and ERP data may be uploaded to the NEMO FTP site., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. annotation, classification, labeling, eeg, event-related potential, meg, rdf, metadata standard, decomposition, segmentation, extraction, brain, electromagnetic, electrocorticography, information specification, magnetic resonance is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: University of Oregon; Oregon; USA
is parent organization of: NEMO Ontology
PMID:22180824 THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10899 http://www.nitrc.org/projects/nemo
https://sourceforge.net/projects/nemoontologies/
http://nemo.nic.uoregon.edu SCR_002001 Neural ElectroMagnetic Ontologies 2026-02-14 02:05:02 20
GenePaint E15 Atlas
 
Resource Report
Resource Website
GenePaint E15 Atlas (RRID:SCR_002786) GenePaint Map E15.5 data or information resource, atlas, reference atlas Abbreviated reference atlas for the Embryonic 15.5 post conception day mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing between planes of sectioning is permitted thus allowing the most appropriate plane to be selected. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). expression, gene, gene expression, anatomical, anatomy, basal forebrain, brain, cerebellum, cortex, developmental, digitized, globus pallidus, hippocampus, map, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, pons, prenatal, region, septum, striatum, thalamus, tract, ventral striatum, image, nissl stain, embryonic mouse, thalamus, nerve tract, development is related to: GenePaint P7 Atlas
is related to: GenePaint P56 Mouse Atlas
has parent organization: GenePaint
Free, Freely available nif-0000-24447 SCR_002786 GenePaint E15.5 Mouse Atlas 2026-02-14 02:05:17 0
DPARSF
 
Resource Report
Resource Website
500+ mentions
DPARSF (RRID:SCR_002372) DPARSF data processing software, software resource, software toolkit, software application A MATLAB toolbox forpipeline data analysis of resting-state fMRI that is based on Statistical Parametric Mapping (SPM) and a plug-in software within DPABI. After the user arranges the Digital Imaging and Communications in Medicine (DICOM) files and click a few buttons to set parameters, DPARSF will then give all the preprocessed (slice timing, realign, normalize, smooth) data and results for functional connectivity, regional homogeneity, amplitude of low-frequency fluctuation (ALFF), fractional ALFF, degree centrality, voxel-mirrored homotopic connectivity (VMHC) results. DPARSF can also create a report for excluding subjects with excessive head motion and generate a set of pictures for easily checking the effect of normalization. In addition, users can also use DPARSF to extract time courses from regions of interest. DPARSF basic edition is very easy to use while DPARSF advanced edition (alias: DPARSFA) is much more flexible and powerful. DPARSFA can parallel the computation for each subject, and can be used to reorient images interactively or define regions of interest interactively. Users can skip or combine the processing steps in DPARSF advanced edition freely. magnetic resonance, fmri, resting-state fmri, matlab, analysis, brain is used by: DPABI
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Beijing Normal University; Beijing; China
has parent organization: RFMRI.ORG
PMID:20577591 GNU General Public License nlx_155735 http://www.nitrc.org/projects/dparsf SCR_002372 Data Processing Assistant for Resting-State fMRI 2026-02-14 02:05:25 564
Mindboggle
 
Resource Report
Resource Website
100+ mentions
Mindboggle (RRID:SCR_002438) Mindboggle software resource, data processing software, software application Mindboggle (http://mindboggle.info) is open source software for analyzing the shapes of brain structures from human MRI data. The following publication in PLoS Computational Biology documents and evaluates the software: Klein A, Ghosh SS, Bao FS, Giard J, Hame Y, Stavsky E, Lee N, Rossa B, Reuter M, Neto EC, Keshavan A. (2017) Mindboggling morphometry of human brains. PLoS Computational Biology 13(3): e1005350. doi:10.1371/journal.pcbi.1005350 analyze, anatomic, atlas application, console (text based), labeling, python, magnetic resonance, os independent, region of interest, segmentation, brain, label, mri, anatomy, cerebral cortex, human brain, parcellation, morphometry, shape measures, cortical thickness, cortical depth, Laplace-Beltrami spectra, Zernike moments is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) NIMH MH084029-02 Free, Available for download, Freely available nlx_155813 http://www.nitrc.org/projects/mindboggle SCR_002438 2026-02-14 02:05:22 211
SRI24 Atlas: Normal Adult Brain Anatomy
 
Resource Report
Resource Website
10+ mentions
SRI24 Atlas: Normal Adult Brain Anatomy (RRID:SCR_002551) SRI24 Atlas, SRI24, sri24-atlas data or information resource, atlas, reference atlas An MRI-based atlas of normal adult human brain anatomy, generated by template-free nonrigid registration from images of 24 normal control subjects. The atlas comprises T1, T2, and PD weighted structural MRI, tissue probability maps (GM, WM, CSF), maximum-likelihood tissue segmentation, DTI-based measures (FA, MD, longitudinal and transversal diffusivity), and two labels maps of cortical regions and subcortical structures. The atlas is provided at 1mm isotropic image resolution in Analyze, NIFTI, and Nrrd format. We are also providing an experimental packaging for use with SPM8. analyze, model, magnetic resonance, nifti, nrrd, neuroanatomy, adult human, brain, mri, dti is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
has parent organization: Stanford Research Institute International
Normal NIAAA AA005965;
NIAAA AA012888;
NIAAA AA017347;
NIAAA AA017168;
NIA AG017919
PMID:20017133 Free, Available for download, Freely available nlx_155957 SCR_002551 sri24-atlas - MRI-based brain atlas of normal adult human brain anatomy, SRI24 Multi-Channel Atlas of Normal Adult Human Brain Structure 2026-02-14 02:05:16 10
NeuroMab
 
Resource Report
Resource Website
1000+ mentions
NeuroMab (RRID:SCR_003086) NeuroMab data or information resource, organization portal, portal A national mouse monoclonal antibody generating resource for biochemical and immunohistochemical applications in mammalian brain. NeuroMabs are generated from mice immunized with synthetic and recombinant immunogens corresponding to components of the neuronal proteome as predicted from genomic and other large-scale cloning efforts. Comprehensive biochemical and immunohistochemical analyses of human, primate and non-primate mammalian brain are incorporated into the initial NeuroMab screening procedure. This yields a subset of mouse mAbs that are optimized for use in brain (i.e. NeuroMabs): for immunocytochemical-based imaging studies of protein localization in adult, developing and pathological brain samples, for biochemical analyses of subunit composition and post-translational modifications of native brain proteins, and for proteomic analyses of native brain protein networks. The NeuroMab facility was initially funded with a five-year U24 cooperative grant from NINDS and NIMH. The initial goal of the facility for this funding period is to generate a library of novel NeuroMabs against neuronal proteins, initially focusing on membrane proteins (receptors/channels/transporters), synaptic proteins, other neuronal signaling molecules, and proteins with established links to disease states. The scope of the facility was expanded with supplements from the NIH Blueprint for Neuroscience Research to include neurodevelopmental targets, the NIH Roadmap for Medical Research to include epigenetics targets, and NIH Office of Rare Diseases Research to include rare disease targets. These NeuroMabs will then be produced on a large scale and made available to the neuroscience research community on an inexpensive basis as tissue culture supernatants or purified immunoglobulin by Antibodies Inc. The UC Davis/NIH NeuroMab Facility makes NeuroMabs available directly to end users and is unable to accommodate sales to distributors for third party distribution. Note, NeuroMab antibodies are now offered through antibodiesinc. antibody, brain, channel, disease-related protein, k channel subunit, mab, mammalian, membrane protein, monoclonal antibody, mouse, neuronal monoclonal antibody, neuronal protein, neuronal signaling molecule, reagent, receptor, research reagent, synaptic protein, transporter is used by: NIF Data Federation
is listed by: OMICtools
has parent organization: University of California at Davis; California; USA
NINDS ;
NIMH ;
NIH Blueprint for Neuroscience Research ;
NIH Roadmap for Medical Research ;
Office of Rare Diseases Research ;
Antibodies Inc.
Free, Freely available grid.482686.6, nif-0000-00175 https://ror.org/00fyrp007 SCR_003086 UCDavis/NIH NeuroMab Facility, antibodies.inc, antibodiesinc.com, antibodiesinc 2026-02-14 02:05:26 1810
GenePaint P7 Atlas
 
Resource Report
Resource Website
GenePaint P7 Atlas (RRID:SCR_002787) GenePaint Map P7 data or information resource, atlas, reference atlas Abbreviated reference atlas for the P56 mouse. All sections were nissl stained and digitized. To assist in the initial identification of sites of gene expression sites, maps of brains are available for E15.5, P7 and the adult. These maps depict the boundaries of major brain regions (cortex, thalamus, striatum, globus pallidus, ventral striatum, septum, basal forebrain, hippocampus, midbrain, pons, medulla, cerebellum) and also show the more prominent nerve tracts. Maps are most efficiently used by placing the window depicting the map of interest next to the gene expression image. Browsing between planes of sectioning is permitted thus allowing the most appropriate plane to be selected. The annotation of anatomical details such as brain nuclei is currently beyond the scope of the GenePaint database. Hence, such information on the anatomy of the brain and embryo should be obtained from published atlases of mouse anatomy (Kaufman, 1995; Paxinos and Franklin, 2001; Jacobowitz and Abbott, 1997; Schambra et al., 1992; Valverde1998). gene, anatomical, anatomy, annotation, atlas, basal forebrain, brain, cerebellum, cortex, developmental, digitized, globus pallidus, hippocampus, map, medulla, midbrain, mouse, nerve, nissl staining protocol, nucleus, pons, region, septum, stained, striatum, thalamus, tract, ventral striatum, image, gene expression, young mouse is related to: GenePaint E15 Atlas
is related to: GenePaint P56 Mouse Atlas
is related to: GenePaint P56 Mouse Atlas
has parent organization: GenePaint
Free, Freely available nif-0000-24449 SCR_002787 GenePaint Mouse Brain Map P7, GenePaint P7 Atlas 2026-02-14 02:05:26 0
Allen Institute for Brain Science Sleep Study
 
Resource Report
Resource Website
1+ mentions
Allen Institute for Brain Science Sleep Study (RRID:SCR_002983) Allen Sleep Study data or information resource, atlas, data set Collection of gene expression data in mouse brain for five different conditions of sleep and wakefulness to understand sleep deprivation and dynamic changes underlying sleep and wake cycles. Platform to generate cellular resolution expression data. gene, expression, brain, data, image, mice, microarray, nissl, sleep, deprivation, wake, cycle, wakefulness, neuroanatomy is listed by: 3DVC
has parent organization: Allen Institute for Brain Science
Free, Public nif-0000-00507 SCR_002983 Sleep Study 2026-02-14 02:05:03 2
Virtual Fly Brain
 
Resource Report
Resource Website
10+ mentions
Virtual Fly Brain (RRID:SCR_004229) VFB data or information resource, atlas, neurons, expression An interactive tool for neurobiologists to explore the detailed neuroanatomy, neuron connectivity and gene expression of the adult Drosophila melanogaster brain. Drosophila, brain, neurons, innervation patterns, gene expression, transgene expression, phenotypes, neuroanatomy, neurobiology uses: Drosophila Gross Anatomy Ontology
uses: Drosophila Development Ontology
is related to: FlyBase
is related to: Flycircuit
is related to: Janelia Research
has parent organization: University of Edinburgh; Scotland; United Kingdom
has parent organization: University of Cambridge; Cambridge; United Kingdom
has parent organization: European Bioinformatics Institute
Wellcome Trust PMID:22180411 nlx_143644 http://www.virtualflybrain.org/site/vfb_site/home.htm SCR_004229 VirtualFlyBrain.org, VFB, Virtual Fly Brain 2026-02-14 02:05:24 45
UNC Human Brain Atlas
 
Resource Report
Resource Website
1+ mentions
UNC Human Brain Atlas (RRID:SCR_002606) UNC Human Brain Atlas data or information resource, atlas, reference atlas Human brain atlases for adult, pediatric and elderly populations, by iterative joint deformable registration of training datasets into a single unbiased average image. Atlases packages include T1-weighted images, tissue priors (WM,GM,CSF), lobar parcellation maps and subcortical structures. Current available atlases: * Adult atlas: Symmetric atlas generated from 50+ healthy adult subjects (20-59 year old). * UNC-MNI Pediatric 1-year-old atlas: Symmetric atlas generated from 104 1-year-old subjects, combining children at high familial risk of autism and controls. * Pediatric 4-year-old atlas: Symmetric atlas generated from 10 4-year-old healthy subjects. * Elderly atlas: Atlas generated from 27 healthy elderly subjects (60+ years old). Additional information and acknowledgment for their usage can be found by clicking on the release notes. atlas data, magnetic resonance, nrrd, adult human, young human, pediatric, infant, late adult human, brain is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: INCF Software Center
is related to: NeoSegPipeline
has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA
Free, Available for download, Freely available nlx_156009 SCR_002606 2026-02-14 02:05:22 4
Centre for Vision Research
 
Resource Report
Resource Website
Centre for Vision Research (RRID:SCR_002879) data or information resource, organization portal, portal The Centre for Vision Research focuses on interdisciplinary research into human and machine vision and visual processes, into vision's interactions with other senses and with motor and cognitive processes, and in applications such as visually-guided robotics or clinical diagnosis and treatment. The Centre for Vision Research includes the following major research themes: - Human Visual Performance - Visual Human-Computer Interaction, Graphics and Virtual Reality - Visual Psychophysics - Eye Movements and Hand-Eye Coordination - Computational Modeling and Computer Vision - Electrophysiology - Clinical and Developmental Studies - Brain Imaging electrophysiology, engineering, eye, biology, brain, clinical, cognition, cognitive, computer, computer science, coordination, developmental, graphic, health science, human, imaging, interaction, kinesiology, machine, modeling, motor, performance, psychology, psychophysics, research, sense, technology, virtual, vision has parent organization: York University; Ontario; Canada Free, Freely available nif-0000-25614 SCR_002879 CVR 2026-02-14 02:05:22 0
BrainTechSci.
 
Resource Report
Resource Website
BrainTechSci. (RRID:SCR_000113) data or information resource, narrative resource, blog Blog about brain technology and science news that covers topics such as high-resolution brain imaging, brain maps API and whole-brain atlases. brain, science, blog, technology, writing, education Free nlx_51508 SCR_000113 BrainTechSci 2026-02-14 02:05:59 0
BAMS Connectivity
 
Resource Report
Resource Website
1+ mentions
BAMS Connectivity (RRID:SCR_000561) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 9,2022. Database of information about brain region circuitry, it collates data from the literature on tract tracing studies and provides tools for analysis and visualization of connectivity between brain regions., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. brain, neural circuitry, connectivity, brain region, neuroanatomy, neuronal tract tracing, connectome is used by: NIF Data Federation
is related to: Integrated Manually Extracted Annotation
has parent organization: Brain Architecture Management System
THIS RESOURCE IS NO LONGER IN SERVICE nlx_144138 http://brancusi.usc.edu/bkms/, http://brancusi.usc.edu/ SCR_000561 Brain Architecture Management System Connectivity Data 2026-02-14 02:05:32 1

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