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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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EBRAINS Knowledge Graph Resource Report Resource Website 1+ mentions |
EBRAINS Knowledge Graph (RRID:SCR_017612) | data management software, software application, database, software resource, service resource, data or information resource | Metadata management system built for EBRAINS. Multi modal metadata store which brings together information from different areas of Human Brain Project as well as from external partners. Graph database tracks linkage between experimental data and neuroscientific data science supporting more extensive data reuse and complex computational research.Supports rich terminologies, ontologies and controlled vocabularies. Built by design to support iterative elaborations of common standards and supports these by probabilistic suggestion and review systems. | Metadata, managing, system, neuroscience, experimental, data, human, brain, graph, database, terminology, ontology |
is related to: Human Brain Project is related to: MarmotGraph |
European Union’s Horizon 2020 Framework Programme for Research and Innovation 720270; European Union’s Horizon 2020 Framework Programme for Research and Innovation 785907 |
Free, Freely available | https://kg.humanbrainproject.eu/ | SCR_017612 | New Enabling Infrastructure for Neuroscience Knowledge Graph, EBRAINS Knowledge Graph (KG), HBP Knowledge Graph | 2026-02-15 09:22:10 | 8 | |||||||
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Single Cell Developmental Database Resource Report Resource Website 1+ mentions |
Single Cell Developmental Database (RRID:SCR_017546) | SCDevDB | database, data set, service resource, storage service resource, data repository, data or information resource | Database for insights into single cell gene expression profiles during human developmental processes. Interactive database provides DE gene lists in each developmental pathway, t-SNE map, and GO and KEGG enrichment analysis based on these differential genes. | Single, cell, gene, expression, profile, human, development, process, data | RGC General Research Fund ; GRF Research Project |
DOI:10.3389/fgene.2019.00903 | Free, Available for download, Freely available | SCR_017546 | Single-Cell Developmental Database | 2026-02-15 09:21:22 | 2 | |||||||
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CircaDB Resource Report Resource Website 10+ mentions |
CircaDB (RRID:SCR_018078) | CircaDB | database, software resource, data access protocol, web service, data or information resource | Database of mammalian circadian gene expression profiles. Works with link outs to Wikipedia, HomoloGene, Refseq, etc.. Open source database of circadian transcriptional profiles from time course expression experiments from mice and humans. | Mammalian circadian gene, gene expression, expression profile, mice, human, gene annotation, data, time course expression data | PMID:23180795 | Free, Freely available | http://github.com/itmat/circadb | SCR_018078 | Circadian gene expression profiles DataBase | 2026-02-15 09:22:10 | 19 | |||||||
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National Gene Vector Laboratories Resource Report Resource Website 1+ mentions |
National Gene Vector Laboratories (RRID:SCR_015944) | NGVL | data or information resource, topical portal, portal | The National Gene Vector Laboratories (NGVL) was established as a cooperative national effort to produce and distribute vectors for human gene transfer studies. | gene, therapy, manufacturing, toxicology, human, research, vector, transfer, study | is used by: Adobe Illustrator | NIH | SCR_015944 | 2026-02-15 09:21:42 | 2 | |||||||||
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HIRN Consortium on Human Islet Biomimetics Resource Report Resource Website |
HIRN Consortium on Human Islet Biomimetics (RRID:SCR_016199) | HIRN-CHIB, CHIB | organization portal, data or information resource, consortium, portal | Consortium that is an independent research initiative of the Human Research Information Network (HIRN). It is combining advances in beta cell biology and cell biology with tissue engineering technologies to develop microdevices that support functional human islets. | beta, cell, biology, tissue, bioengineering, nanoengineering, human, stem | is organization facet of: Human Islet Research Network (HIRN) | NIDDK ; NIDDK U01 DK104162; NIDDK UC4 DK104208; NIDDK UC4 DK104196; NIDDK UC4 DK104202; NIDDK UC4 DK104165; NIDDK UC4 DK116283 |
SCR_016199 | Consortium on Human Islet Biomimetics (HIRN-CHIB) | 2026-02-15 09:21:50 | 0 | ||||||||
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Cerebrovascular Disease Knowledge Portal Resource Report Resource Website 10+ mentions |
Cerebrovascular Disease Knowledge Portal (RRID:SCR_015628) | CDKP | portal, database, data or information resource, topical portal, disease-related portal | Portal enables browsing, searching, and analysis of human genetic information linked to cerebrovascular disease and related traits, while protecting the integrity and confidentiality of the underlying data. | human, genetic, information, cerebrovascular, disease, data, knowledge |
is listed by: NIDDK Information Network (dkNET) has parent organization: Massachusetts General Hospital Labs and Facilities |
cerebrovascular disease | NINDS ; NIH ; Accelerating Medicines Partnership in Type 2 Diabetes |
Free, Available for download | SCR_016535 | SCR_015628 | Cerebrovascular Disease Knowledge Portal (CDKP) | 2026-02-15 09:21:34 | 14 | |||||
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LESYMAP Resource Report Resource Website 10+ mentions |
LESYMAP (RRID:SCR_017967) | software toolkit, software resource | Software R package to conduct lesion-to-symptom mapping from human MRI data.Takes lesion maps and cognitive performance scores from patients with stroke, and maps brain areas responsible for cognitive deficit. | Conduct, lesion, symptom, mapping, human, MRI, data, cognitive, performance, score, patient, brain, area, deficit | Free, Available for download, Freely available | https://dorianps.github.io/LESYMAP/ | SCR_017967 | Lesion to Symptom Mapping | 2026-02-15 09:22:09 | 12 | |||||||||
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Laboratory of Neuro Imaging Resource Report Resource Website 50+ mentions |
Laboratory of Neuro Imaging (RRID:SCR_001922) | LONI | training resource, biomedical technology resource center | Biomedical technology resource center specializing in novel approaches and tools for neuroimaging. It develops novel strategies to investigate brain structure and function in their full multidimensional complexity. There is a rapidly growing need for brain models comprehensive enough to represent brain structure and function as they change across time in large populations, in different disease states, across imaging modalities, across age and sex, and even across species. International networks of collaborators are provided with a diverse array of tools to create, analyze, visualize, and interact with models of the brain. A major focus of these collaborations is to develop four-dimensional brain models that track and analyze complex patterns of dynamically changing brain structure in development and disease, expanding investigations of brain structure-function relations to four dimensions. | anatomic, animal, brain, brain function, brain structure, cerebral metabolism, human, mapping, neurobiological, software, neuroimaging, fmri, mri, neuroimaging, software, brain mapping, computational software, magnetic resonance |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Wavelet Analysis of Image Registration is related to: Sub-Volume Thresholding Analysis is related to: jViewbox is related to: MultiPhase-SEG is related to: LONI Java Image I/O Plugins is related to: DualSurfaceMin is related to: Charged Fluid Model for Brain Image Segmentation is related to: MINC/Atlases has parent organization: University of Southern California Keck School of Medicine; California; USA is parent organization of: Center for Computational Biology at UCLA is parent organization of: LONI Visualization Tool is parent organization of: International Consortium for Brain Mapping is parent organization of: LONI Provenance Editor is parent organization of: TetraMetrix is parent organization of: Synchronized Histological Image Viewing Architecture is parent organization of: LONI ShapeViewer is parent organization of: LONI ShapeTools is parent organization of: FFT Library is parent organization of: Mouse BIRN Atlasing Toolkit is parent organization of: MGH-USC Human Connectome Project is parent organization of: Mouse Connectome Project is parent organization of: LONI Inspector is parent organization of: Parkinson's Progression Markers Initiative is parent organization of: BrainSolution is parent organization of: BrainGraph Editor is parent organization of: INVIZIAN is parent organization of: LONI Brain Parser is parent organization of: LONI De-identification Debablet is parent organization of: iTools is parent organization of: Pipeline Neuroimaging VirtualEnvironment is parent organization of: MultiTracer is parent organization of: International Consortium for Brain Mapping |
NCRR 5 P41 RR013642 | LONI Software License | nif-0000-10494 | http://www.nitrc.org/projects/loni | http://loni.ucla.edu/ | SCR_001922 | UCLA Laboratory of Neuro Imaging, Laboratory of Neuroimaging, UCLA LONI, USC Laboratory of Neuro Imaging | 2026-02-15 09:18:12 | 58 | ||||
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Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center Resource Report Resource Website |
Beth Israel Deaconess Medical Center Genomics Proteomics Bioinformatics and Systems Biology Center (RRID:SCR_009668) | BIDMC Genomics, Proteomics, Bioinformatics and Systems Biology Center | access service resource, core facility, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27, 2023. Core provides services: RT PCR service, Gene expression profiling service, Proteomics analysis service, Bioinformatics and Systems Biology analyses, Next Generation Sequencing Service, Affymetrix Human and Mouse Gene 2.0 ST Arrays and 2.1 ST Arrayplates. Core proteomics facility for the Dana-Farber/Harvard Cancer Center. Workflows and algorithms for analysis of next-generation sequencing data including RNA-Seq, ChIP-Seq, Epigenetics-Seq and DNA seq, Comprehensive workflow for analysis of Microbiome sequencing data, Integrated systems biology analysis of transcriptome, miRNA, epigenome, metabolomics and proteomics data. Pipelines: MALDI Tissue imaging and targeted quantitative proteomics. | RT PCR, transcriptome, epigenome, metabolomics, profiling, assay, protein, expression, pathway, data, bioinformatics, analysis, next, generation, sequencing, human, mouse, array, tissue, imaging |
is listed by: Eagle I is related to: Beth Israel Deaconess Medical Center Labs and Facilities is related to: Harvard University Labs and Facilities has parent organization: Harvard University; Cambridge; Massachusetts |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156126 | http://www.bidmcgenomics.org/ | SCR_009668 | Beth Israel Deaconess Medical Center, BIDMC | 2026-02-15 09:20:10 | 0 | ||||||
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BIDMC Transcranial Magnetic Stimulation Core Resource Report Resource Website |
BIDMC Transcranial Magnetic Stimulation Core (RRID:SCR_011022) | BIDMC TMS Core | access service resource, core facility, service resource | At the Berenson-Allen Center for Noninvasive Brain Stimulation (CNBS) at Beth Israel Deaconess Medical Center and Harvard Medical School we have three distinct missions: Research, Education and Patient Care. Our research explores brain-behavior relations, brain plasticity and its modulation, employing different noninvasive brain stimulation techniques combined with careful task design, electroencephalography, and functional brain imaging. Educational efforts feature several Continuing Medical Education Courses including a week long intensive course in noninvasive brain stimulation offered 3 times per year. Our clinical program offers noninvasive brain stimulation for treatment of neuropsychiatric disorders such as depression and schizophrenia, epilepsy, and chronic pain. Clinical work also includes studies of central motor conduction time, cortical excitability, and noninvasive cortical mapping. | consulting, human, transcranial magnetic stimulation, transcranial direct current stimulation | is related to: Beth Israel Deaconess Medical Center Labs and Facilities | SciEx_9461 | http://www.tmslab.org/tmscore-equipment.php | http://www.scienceexchange.com/facilities/transcranial-magnetic-stimulation-core-harvard | SCR_011022 | Beth Israel Deaconess Medical Center Transcranial Magnetic Stimulation Core | 2026-02-15 09:20:26 | 0 | ||||||
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Stanford Diabetes Research Center Diabetes Immune Monitoring Core Resource Report Resource Website |
Stanford Diabetes Research Center Diabetes Immune Monitoring Core (RRID:SCR_016210) | DIMC, SDRC-DIMC | access service resource, core facility, service resource | Core facility that provides immune monitoring assays at the RNA, protein, and cellular level, as well as archiving, reporting, and data mining support for clinical and translational studies related to Diabetes. The DIMC is a specialized subcore of the Human Immune Monitoring Center (HIMC) at Stanford. | diabetes, assay, immune, system, clinical, translational, human, data |
is related to: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is organization facet of: Stanford Diabetes Research Center |
NIDDK P30 DK116074 | SCR_016210 | Diabetes Immune Monitoring Core, SDRC Diabetes Immune Monitoring Core | 2026-02-15 09:21:03 | 0 | ||||||||
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Massachusetts University Medical School RNAi Core Facility Resource Report Resource Website |
Massachusetts University Medical School RNAi Core Facility (RRID:SCR_017727) | RNAi Core | access service resource, core facility, service resource | Facility houses complete collections of human and mouse lentiviral short hairpin RNA (shRNA) libraries from Open Biosystems/GE Dharmacon, Mammalian Gene Collection (MGC) cDNA Library, and human and mouse CRISPR/Cas9 GeCKO v2 libraries from Addgene. | Human, mouse, lentiviral, short, hairpin, RNA, shRNA, library, core | Restricted | ABRF_151 | SCR_017727 | RNAi Core Facility | 2026-02-15 09:22:06 | 0 | ||||||||
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Quebeck Sherbrooke University Genomic Core Facility Resource Report Resource Website |
Quebeck Sherbrooke University Genomic Core Facility (RRID:SCR_017785) | LGFUS | access service resource, core facility, service resource | Provides system for Splicing isoform Annotation. This LISA platform allows high throughput annotation and functional analysis of Alternate Splicing in humans. | Splicing, isoform, annotation, LISA, platform, functional, analysis, alternate, human, service, core | Restricted | ABRF_395 | SCR_017785 | Laboratoire de genomique fonctionnelle de l'University de Sherbrooke | 2026-02-15 09:22:06 | 0 | ||||||||
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Chicago University iPSC Core Facility Resource Report Resource Website |
Chicago University iPSC Core Facility (RRID:SCR_017918) | access service resource, core facility, service resource | Core provides training to use latest episomal techniques to reprogram, expand and characterize human and mice iPS cells from skin or blood tissues of healthy subjects and diseased patients. Develops capability to differentiate iPS cells into specific somatic cells, such as neutrons, cardiomyocytes, and hepatocytes. | Training, episomal, technique, reprogram, expand, characterize, human, mice, iPS, cell, skin, blood, tissue, healthy, diseased, patient, somatic, neuron, cardiomyocyte, hepatocyte, service, core, ABRF | is listed by: ABRF CoreMarketplace | ABRF_803 | SCR_017918 | IPSC Core Facility | 2026-02-15 09:22:08 | 0 | |||||||||
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Massachusetts Institute of Technology Koch Institute Preclinical Modeling Core Facility Resource Report Resource Website |
Massachusetts Institute of Technology Koch Institute Preclinical Modeling Core Facility (RRID:SCR_017899) | access service resource, core facility, service resource | Core provides service support to all MIT investigators who utilize specialized in vitro cells such as stem cells, organoids, or primary cell lines and/or novel mouse models to study human diseases such as cancer. Projects involve generation of new model system, such as CRISPR-mediated gene editing in mouse to introduce mutation that mimics one found in patients. Helps with projects required optimization of finicky cell cultures and other challenges.Provides customizable set of service options to match specific needs of each project, including consultative advice and troubleshooting, complete tissue culture and microinjection services within our facilities or hands-on training to enable investigators to perfom these experiments either at their own laboratory or within our facilities.Services Include:Gene Targeting genomic modification through traditional or CRISPR/Cas9 locus targeting, assistance with targeting strategies and vector designs;Embryonic Stem Cells generation of new ES lines from mouse strains, importation and testing of lines from outside sources, differentiation of ES lines into specific cell lineages or cell types and more;Microinjection injection of mouse ES cells into blastocysts to generate chimeras and injection of DNA, RNA or CRISPR RNPs into the pronucleus of fertilized mouse eggs to generate transgenic and edited mice;Specialized Tissue Culture establishemnt of new primary cell cultures from a tumor, tissue or organ; Isolation of fibroblasts (MEFs) from mice for culture and analysis;Tissue Culture for Xenograft and Syngenic Modeling optimization, validation and testing of cell lines for orthotopic placement into mice, coordinated with Preclinical Testing Facility;Repository of Reagent Mice Commonly used wild type mice such as C57BL/6j as well as KrasG12D-based models of cancers are maintained on campus for efficient distrubution;Training and Troubleshooting for all aspects of embryonic stem cells, primary cultures, animal breeding etc.;Serum, DMEM, LIF and other media components that have been tested and verified for use with ES cells. | Preclinical, modeling, system, in vitro, cell, stem, organoid, primary, mouse, human, disease, CRISP, gene, editing, mutation, patient, microinjection, training, service, core, ABRF | is listed by: ABRF CoreMarketplace | Restricted | ABRF_766 | SCR_017899 | Preclinical Modeling Facility | 2026-02-15 09:21:29 | 0 | ||||||||
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Northwestern University Center for Translational Imaging Core Facility Resource Report Resource Website 1+ mentions |
Northwestern University Center for Translational Imaging Core Facility (RRID:SCR_017878) | CTI, CAMRI | access service resource, core facility, service resource | Core is Northwestern Radiology research facility providing translational imaging capabilities that promote pre-clinical and clinical research efforts. CTI occupies space in basement of Olson building housing imaging equipment along with research staff. Services include Cardiovascular Imaging for development, analysis and application of MRI methods providing insights into structure and function of cardiovascular system,NeuroImaging for functional MRI using spectroscopy and diffusion-weighted imaging to studying human anatomy and physiology during development and disease,Small Animal Imaging for molecular and functional imaging of biological processes in living animal models to study diseases and responses to intervention. | Translational, imaging, clinical, cardiovascular, neuroimaging, functional, MRI, human, anatomy, physiology, development, disease, living, animal, model, intervention, response, service, core, ABRF | is listed by: ABRF CoreMarketplace | Open | ABRF_719 | SCR_017878 | Center for Translational Imaging | 2026-02-15 09:22:17 | 1 | |||||||
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XTRACT Resource Report Resource Website 1+ mentions |
XTRACT (RRID:SCR_024933) | software application, software resource | Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain. | automated tractography, tractography, human, macaque, brain | is a plug in for: FSL | Medical Research Council PhD Studentship UK ; Marie Skłodowska-Curie Individual Fellowship Grant ; Biotechnology and Biological Sciences Research Council ; Netherlands Organization for Scientific Research NWO Netherlands ; Sir Henry Dale Wellcome Trust Fellowship UK ; MRC Career Development Fellowship UK ; Wellcome Trust Collaborative Award UK ; UK Engineering and Physical Sciences Research Council ; Wellcome Trust grant UK ; Human Connectome Project ; NIMH 1U54MH091657; McDonnell Center for Systems Neuroscience at Washington University ; NIH ; UK Biobank Resource ; Wellcome Trust |
PMID:32407993 | Free, Freely available | SCR_024933 | 2026-02-15 09:23:40 | 2 | ||||||||
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MarmotGraph Resource Report Resource Website |
MarmotGraph (RRID:SCR_027452) | software application, knowledge graph, software resource | Knowledge graph system developed for managing and organizing rich metadata objects, initially for the Human Brain Project (HBP) and now extended to be a more generic, domain-agnostic solution. It is associated with CSCS (Swiss National Supercomputing Centre) and aims to provide a comprehensive toolset and API for working with knowledge graphs. | Metadata, managing, system, neuroscience, experimental, data, human, brain, graph, database, terminology, ontology | is related to: EBRAINS Knowledge Graph | Free, Freely available, | SCR_027452 | Management Applications for Rich Metadata ObjecTs Graph | 2026-02-15 09:24:13 | 0 | |||||||||
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Cancer Research UK Scotland Institute Molecular Technology Service Core Facility Resource Report Resource Website |
Cancer Research UK Scotland Institute Molecular Technology Service Core Facility (RRID:SCR_027368) | access service resource, core facility, service resource | Core provides Next Generation Sequencing (NGS) services and Single Cell services predominantly focussing on single cell RNAseq. Processes samples for variety of cancer associated projects, in both mouse and human derived materials. Offers full end-to-end service, from initial study design and planning, through sample QC, full library preparation, sequencing and data return. Offers range of standard molecular tests covering, plasmid purifications, Sanger sequencing and mycoplasma screening. | ABRF, Next Generation Sequencing, single cell RNAseq, cancer, mouse, human, |
is listed by: ABRF CoreMarketplace has parent organization: Cancer Research UK Scotland Institute |
Restricted | ABRF_4609 | https://coremarketplace.org/RRID:SCR_027368/?citation=1 | SCR_027368 | Scotland Institute Molecular Technology Service Core Facility | 2026-02-15 09:24:07 | 0 | |||||||
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American College of Clinical Pharmacy Resource Report Resource Website 1+ mentions |
American College of Clinical Pharmacy (RRID:SCR_003957) | ACCP | nonprofit organization | A professional and scientific society that provides leadership, education, advocacy, and resources enabling clinical pharmacists to achieve excellence in practice and research. Their membership is composed of practitioners, scientists, educators, administrators, students, residents, fellows, and others committed to excellence in clinical pharmacy and patient pharmacotherapy. The Practice and Research Networks (PRNs) represent focused interest groups of ACCP members, providing a means for clinical pharmacists with common practice and research interests to gather for professional interaction, networking, and continuing education. Activities within individual PRNs may vary depending on the interests and perceived needs of their members. All PRNs conduct educational programs within their interest areas at the ACCP Annual Meeting and the Spring Practice and Research Forum. | clinical, pharmacy, pharmacotherapy, human | is related to: Kidney Health Initiative | grid.417936.e, Crossref funder ID: 100005321, ISNI: 0000 0001 2097 285X, nlx_158370, Wikidata: Q23894214 | https://ror.org/02srcnm40 | SCR_003957 | 2026-02-14 02:00:34 | 3 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
