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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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3D Printed Multi Pump System Resource Report Resource Website |
3D Printed Multi Pump System (RRID:SCR_023575) | instrument resource | System includes 3D Printed Syringe Pump Rack composed by 5 Syringe Pumps to have 2 continuous flow systems and one remaining pump. Syringe Pump is used to gradually administer small amounts of fluid to patient or for use in chemical and biomedical research. Main features include Open hardware/software, Extremely compact size ( 7cm movement range ), High precision lead screw and nut, Simple to use (command line interface), Simple to replicate, Minimal clean Design. | 3D Printed Syringe Pump Rack, Syringe Pumps, continuous flow system, OpenBehavior | is listed by: OpenBehavior | Freely available, Available for download, | https://edspace.american.edu/openbehavior/project/3d-printed-multi-pump-system/ | SCR_023575 | 3D Printed Syringe Pump Rack | 2026-02-14 02:05:07 | 0 | ||||||||
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Pynapple Resource Report Resource Website |
Pynapple (RRID:SCR_023312) | data processing software, data analysis software, software toolkit, software application, software resource, standalone software | Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms. | OpenBehavior, neural data analysis, neuroscience data analysis, Pandas library objects, raw neuroscience data types, | is listed by: OpenBehavior | DOI:10.1101/2022.12.06.519376 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pynapple/ | SCR_023312 | 2026-02-14 02:05:05 | 0 | ||||||||
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RatHeadphones Resource Report Resource Website |
RatHeadphones (RRID:SCR_023667) | software resource | Repository for highly controlled sound presentation in freely moving rats. Provides all necessary information for building, adjusting, and using Ratphones to reliably present auditory stimulation to freely moving rats. Used for 3D printing of headphones designed for auditory psychophysics in behaving rats. | OpenBehavior, instrument, highly controlled sound presentation, freely moving rats, auditory stimulation, 3D headphones printing, auditory psychophysics, behaving rats, | is listed by: OpenBehavior | Champalimaud Foundation ; Marie Curie Career Integration Grant ; Human Frontier Science Program ; EU FP7 Grant |
DOI:10.1523/ENEURO.0028-23.2023 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ratphones/ | SCR_023667 | Ratphones | 2026-02-14 02:04:50 | 0 | ||||||
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Dual port Lick Detector project Resource Report Resource Website |
Dual port Lick Detector project (RRID:SCR_021454) | data or information resource, instrument resource, portal, project portal | Project related to measuring licking behavior in mice.System includes device used for both real time measurement and manipulation of licking behavior in head fixed mice. System provides distribution package for Dual Port Lick Detector.Package includes files relevant to building lick detector. | Building lick detector files, lick detector, OpenBehavior, Instrument |
is listed by: OpenBehavior is related to: Dual Port Lick Detector |
DOI:10.1152/jn.00500.2018 | Free, Freely available | SCR_021454 | Dual port Lick Detector | 2026-02-14 02:04:54 | 0 | ||||||||
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Cerebro Wireless Optogenetic System project Resource Report Resource Website |
Cerebro Wireless Optogenetic System project (RRID:SCR_021474) | data or information resource, instrument resource, portal, project portal | Project related to wireless controlled optogenetic stimulation. Provides system for wireless optogenetic stimulation developed in Karpova Lab with ability to be customized.Features Cerebro,rechargeable, battery powered wireless receiver;head implant containing optical fibers and two independent laser diodes; base station for transmitting radio signals to Cerebro, controlled by Windows computer via USB or by TTL; charging dock; and Xavier, user friendly GUI for sending and logging base station commands. | Wireless optogenetic stimulation, Janelia open source hardware, Janelia open source software, Cerebro battery powered wireless receiver, head implant, Xavier, OpenBehavior, Instrument | is listed by: OpenBehavior | Free, Freely available | SCR_021474 | Cerebro Wireless Optogenetic System | 2026-02-14 02:04:36 | 0 | |||||||||
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4 Port Nose Poke Resource Report Resource Website |
4 Port Nose Poke (RRID:SCR_021592) | data or information resource, instrument resource, portal, project portal | Portal provides open source nose poke system utilizing Arduino microcontroller, several low cost electronic components, and PVC behavioral arena. System developed by University of Basel scientists for use in behavior experiments. | Instrument, motor behavior, behavioral arena, nose poke system, Arduino microcontroller, OpenBehavior |
is listed by: OpenBehavior has parent organization: University of Basel; Basel; Switzerland |
DOI:10.1016/j.mex.2016.04.002 | Free, Freely available | SCR_021592 | 2026-02-14 02:04:54 | 0 | |||||||||
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Open Source platform for Sensory Tasks project Resource Report Resource Website |
Open Source platform for Sensory Tasks project (RRID:SCR_021468) | data or information resource, instrument resource, portal, project portal | Project related to report animal decision in response to stimulus.Includes software tool as Arduino and Python based platform for Go or No Go sensory task to report animal decision in response to stimulus provided by University of Melbourne, Melbourne, VIC, Australia scientists. | Go or No Go sensory task, report animal decision, stimulus response, OpenBehavior, Instrument | is listed by: OpenBehavior | DOI:10.3389/fncel.2017.00156 | Free, Freely available | SCR_021468 | Open Source platform for Sensory Tasks | 2026-02-14 02:04:59 | 0 | ||||||||
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DeepEthogram Resource Report Resource Website 1+ mentions |
DeepEthogram (RRID:SCR_022355) | DEG | data analysis software, software resource, data processing software, software application | Software tool to extract relevant features from images and use time series of these features to classify whether given behavior is present in each frame of video recording.machine learning pipeline for supervised behavior classification from raw pixels. Performs action recognition ,automated behavior classification, over frames. Used for automated behavior classification to detect and track behavior over time. | OpenBehavior, behavioral data analysis, video analysis, offline analysis software, behavior measurement, supervised behavior classification from raw pixels | is listed by: OpenBehavior | DOI:10.7554/eLife.63377 | Free, Available for download, Freely available | https://github.com/jbohnslav/deepethogram | SCR_022355 | 2026-02-14 02:04:56 | 3 | |||||||
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MRI Compatible Microdrive Resource Report Resource Website |
MRI Compatible Microdrive (RRID:SCR_022352) | data or information resource, instrument resource, portal, project portal | MRI compatible microdrive that can precisely position electrodes without causing significant imaging artifacts. | OpenBehavior, Instrument, device, microdrive, neural signal analysis, neural recording, electrical recording, electrode precisely positioning, MRI compatible equipment | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0495-20.2021 | Free, Freely available | https://osf.io/tnpmk/ | SCR_022352 | 2026-02-14 02:04:43 | 0 | ||||||||
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DeepBhvTracking Resource Report Resource Website 1+ mentions |
DeepBhvTracking (RRID:SCR_022351) | data analysis software, software resource, data processing software, software application | Software tool as novel tracking algorithm that combines deep learning and background subtraction. | OpenBehavior, movement tracking, locomotion and environmental interaction measure, behavior tracking method for laboratory animals | is listed by: OpenBehavior | DOI:10.3389/fnbeh.2021.750894 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/deepbhvtracking/ | SCR_022351 | 2026-02-14 02:04:56 | 1 | ||||||||
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Neonatal Stereotaxic Mouse Adaptor Resource Report Resource Website |
Neonatal Stereotaxic Mouse Adaptor (RRID:SCR_022349) | data or information resource, instrument resource, portal, project portal | 3D printed device for stereotaxic viral delivery into brains of neonatal mice.Used for stable and precise stereotaxic surgery in neonatal mice. | OpenBehavior, Instrument, 3D printed device, stable and precise 3D printed device for stable and precise stereotaxic surgery in neonatal mice, stereotaxic surgery, neonatal mice | is listed by: OpenBehavior | DOI:10.2144/btn-2020-0050 | Free, Freely available | SCR_022349 | 2026-02-14 02:05:01 | 0 | |||||||||
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Behavior Ensemble and Neural Trajectory Observatory Resource Report Resource Website 1+ mentions |
Behavior Ensemble and Neural Trajectory Observatory (RRID:SCR_022348) | BENTO | data analysis software, software resource, data processing software, software application | Software Matlab based tool to visualize and analyze multimodal datasets. | OpenBehavior, behavioral data analysis, neural signal analysis, video analysis, offline analysis software |
is listed by: OpenBehavior has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://github.com/neuroethology/bentoMAT | SCR_022348 | 2026-02-14 02:04:43 | 1 | |||||||
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MARS Developer Resource Report Resource Website |
MARS Developer (RRID:SCR_022346) | data analysis software, software resource, data processing software, software application | Software MARS based Python pipeline used for detection, pose estimation and behavior classification in experiments of any format. Repository contains all the code you'll need to train your own version of MARS. | OpenBehavior, behavior measurement, freely-moving, video analysis, realtime recording and analysis, offline analysis software |
is listed by: OpenBehavior is related to: Mouse Action Recognition System has parent organization: Northwestern University; Illinois; USA |
DOI:10.7554/eLife.63720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/neuroethology-tools/ | SCR_022346 | 2026-02-14 02:04:38 | 0 | ||||||||
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LED Matrix Stimuli Resource Report Resource Website |
LED Matrix Stimuli (RRID:SCR_022345) | data or information resource, instrument resource, portal, project portal | Open source device consists of three LED matrices that can be independently controlled via open source Arduino Uno microcontroller. Matrices of LEDs are mounted above nose pokes to examine perceptual decision making in rats. Highly modifiable LED matrices for visual stimulus presentation in behavioral studies.Designs for printing these accessory devices are available in GitHub account for the project. | OpenBehavior, Instrument, device, behavior apparatus, behavioral task, perceptual decision making in rats |
is listed by: OpenBehavior has parent organization: American University; Washington D.C.; USA |
DOI:10.1523/ENEURO.0563-20.2021 | Free, Freely available | https://github.com/LaubachLab/LED-matrices | SCR_022345 | 2026-02-14 02:05:01 | 0 | ||||||||
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Closed Loop Automated Reaching Apparatus Resource Report Resource Website 1+ mentions |
Closed Loop Automated Reaching Apparatus (RRID:SCR_022365) | CLARA | data or information resource, instrument resource, portal, project portal | Closed loop automated reaching apparatus for interrogating complex motor behaviors.Mechanical components include behavior box, series of cameras, and food pellet dispenser. Single workstation computer manages cameras, communicates with microcontroller, and analyzes mouse behavior in real time using modules extracted from DeepLabCut. Integrates fully automated, markerless kinematic tracking of multiple features to classify animal behavior and delivers neural stimulation based on behavioral outcomes. CLARA is compatible with advanced neurophysiological tools, enabling testing of neurostimulation devices and identification of novel neurological biomarkers.System fully automates trial initiation and pellet delivery and is capable of accurately delivering stimulation in response to trial outcome with short latency. | OpenBehavior, Instrument, interrogating complex motor behaviors apparatus, mouse behavior apparatus, markerless kinematic tracking, kinematic data, animal behavior, neural stimulation |
is listed by: OpenBehavior is related to: Behavioral Segmentation of Open-field in DeepLabCut has parent organization: University of Colorado School of Medicine; Colorado; USA |
DOI:10.1088/1741-2552/ac1ed1 | Free, Freely available | https://github.com/wryanw/CLARA_DLC | SCR_022365 | Closed Loop Automated Reaching Apparatus Project | 2026-02-14 02:04:44 | 1 | ||||||
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TweetyNet Resource Report Resource Website |
TweetyNet (RRID:SCR_022360) | data processing software, software application, segmentation software, software resource, image analysis software | Software tool as single neural network model that learns how to segment spectrograms of birdsong into annotated syllables. | OpenBehavior, automated annotation, bengalese finches, canaries, neural network, song syntax, sound event detection, segment spectrograms, birdsong, annotated syllables | is listed by: OpenBehavior | DOI:10.7554/eLife.63853 | Free, Available for download, Freely available | https://github.com/yardencsGitHub/tweetynet/tree/0.7.0 | SCR_022360 | TweetyNet project | 2026-02-14 02:04:56 | 0 | |||||||
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CellExplorer Resource Report Resource Website 10+ mentions |
CellExplorer (RRID:SCR_022358) | data processing software, data analysis software, time-series analysis software, software application, software resource, 1d time-series analysis software | Open source framework for single cell characterization and visualization.Graphical user interface, standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes. | OpenBehavior, single cell characterization and visualization, classifying single cells, extracellular electrodes | is listed by: OpenBehavior | DOI:10.1016/j.neuron.2021.09.002 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/cellexplorer/ https://github.com/petersenpeter/CellExplorer |
SCR_022358 | 2026-02-14 02:05:01 | 16 | ||||||||
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Pycro Manager Resource Report Resource Website 1+ mentions |
Pycro Manager (RRID:SCR_022356) | software resource, data processing software, data acquisition software, software application | Open source software for customized and reproducible microscope control. Software Python package that enables control of micro-manager as well as development of customized experiments integrated with real-time image processing. | OpenBehavior, microscope control, image processing, micro manager | is listed by: OpenBehavior | DOI:10.1038/s41592-021-01087-6 | Free, Available for download, Freely available | https://github.com/micro-manager/pycro-manager | SCR_022356 | 2026-02-14 02:04:44 | 2 | ||||||||
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Cellpose Resource Report Resource Website 1+ mentions |
Cellpose (RRID:SCR_022332) | data processing software, software application, segmentation software, software resource, image analysis software | Software tool as generalist algorithm for cell and nucleus segmentation. | OpenBehavior, Data Analysis, cell and nucleus segmentation | is listed by: OpenBehavior | DOI:10.1038/s41592-020-01018-x | https://github.com/mouseland/cellpose | SCR_022332 | 2026-02-14 02:05:00 | 7 | |||||||||
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COMPASS Resource Report Resource Website 100+ mentions |
COMPASS (RRID:SCR_022329) | data or information resource, instrument resource, portal, project portal | Non invasive, infrared activity and sleep measurement system that uses passive infrared sensors and Arduino microprocessor. Publication provides protocol for assembling COMPASS as well as provides support protocols and python scripts for data analysis, best practices for optimum results, troubleshooting, and alternative protocols for different use scenarios. | OpenBehavior, Instrument, behavior apparatus, behavior measurement, sleep tracking, infrared sensors, Arduino microprocessor | is listed by: OpenBehavior | DOI:10.1002/cpmo.81 | https://github.com/MRC-Harwell/sleep-tracking | SCR_022329 | Continuous Open Mouse Phenotyping of Activity and Sleep Status | 2026-02-14 02:04:38 | 264 |
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