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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
GeneSeeker
 
Resource Report
Resource Website
1+ mentions
GeneSeeker (RRID:SCR_008347) data or information resource, database The GeneSeeker allows you to search across different databases simultaneously, given a known human genetic location and expression/phenotypic pattern. The GeneSeeker returns any found gene names which are located on the specified location and expressed in the specified tissue. To search for more expression location in one search, just enter them in the textbox for the expression location and separate them with logical operators (and, or, not). You can specify as many tissues as you want, the program starts 20 queries simultaneously, and then waits for a query to finish before starting another query, to keep server loads to a minimum. You can also search only for expression, just leave the cytogenetic location fields blank, and do the query. If you only want to look for one cytogenetic location, only fill in the first location field, and the GeneSeeker will search with only this one. Housekeeping genes , found in Swissprot can be excluded, or genes that are to be excluded can be specified. Human chromosome localizations are translated with an oxford-grid to mouse chromosome localizations, and then submitted to the Mgd. Sponsors: GeneSeeker is a service provided by the Centre for Molecular and Biomolecular Informatics (CMBI). expression, federated database, gene, genetic, biomolecular, chromosome, cytogenetic, database, human, localization, location, molecular, pattern, phenotypic, tissue, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Radboud University; Nijmegen; The Netherlands
biotools:geneseeker, nif-0000-25211 https://bio.tools/geneseeker SCR_008347 GeneSeeker 2026-02-14 02:06:35 5
Material Safety Data Sheets for Infectious Substances of Canada
 
Resource Report
Resource Website
Material Safety Data Sheets for Infectious Substances of Canada (RRID:SCR_013003) MSDS Canada data or information resource, database Material Safety Data Sheets for chemical products are available to laboratory workers for most chemicals and reagents. However because many laboratory workers, whether in research, public health, teaching, etc., are exposed to not only chemicals but infectious substances as well, there was a large gap in the readily available safety literature for employees. These MSDS are produced for personnel working in the life sciences as quick safety reference material relating to infectious micro-organisms. The MSDS are organized to contain health hazard information such as infectious dose, viability (including decontamination), medical information, laboratory hazard, recommended precautions, handling information and spill procedures. The intent of these documents is to provide a safety resource for laboratory personnel working with these infectious substances. Because these workers are usually working in a scientific setting and are potentially exposed to much higher concentrations of these human pathogens than the general public, the terminology in these MSDS is technical and detailed, containing information that is relevant specifically to the laboratory setting. It is hoped along with good laboratory practices, these MSDS will help provide a safer, healthier environment for everyone working with infectious substances. The MSDS is ran by the Public Health Agency of Canada. The Public Health Agency of Canada (PHAC) is the main Government of Canada agency responsible for public health in Canada. PHACs primary goal is to strengthen Canadas capacity to protect and improve the health of Canadians and to help reduce pressures on the health-care system. To do this, the Agency is working to build an effective public health system that enables Canadians to achieve better health and well-being in their daily lives by promoting good health, helping prevent and control chronic diseases and injury, and protecting Canadians from infectious diseases and other threats to their health. PHAC is also committed to reducing health disparities between the most advantaged and disadvantaged Canadians. Because public health is a shared responsibility, the Public Health Agency of Canada works in close collaboration with all levels of government (provincial, territorial and municipal) to build on each others skills and strengths. The Agency also works closely with non-government organizations, including civil society and business, and other countries and international organizations like the World Health Organization (WHO) to share knowledge, expertise and experiences. chemical, chronic, decontamination, disease, dose, hazardous, health, health-care, human, infectious, injury, laboratory, life science, material, material safety data sheet, medical, micro-organism, msds, pathogen, research, safety, substance, toxicology databases, viability nif-0000-21275 SCR_013003 2026-02-14 02:06:16 0
LESYMAP
 
Resource Report
Resource Website
10+ mentions
LESYMAP (RRID:SCR_017967) software resource, software toolkit Software R package to conduct lesion-to-symptom mapping from human MRI data.Takes lesion maps and cognitive performance scores from patients with stroke, and maps brain areas responsible for cognitive deficit. Conduct, lesion, symptom, mapping, human, MRI, data, cognitive, performance, score, patient, brain, area, deficit Free, Available for download, Freely available https://dorianps.github.io/LESYMAP/ SCR_017967 Lesion to Symptom Mapping 2026-02-14 02:07:19 12
BIDMC Transcranial Magnetic Stimulation Core
 
Resource Report
Resource Website
BIDMC Transcranial Magnetic Stimulation Core (RRID:SCR_011022) BIDMC TMS Core core facility, access service resource, service resource At the Berenson-Allen Center for Noninvasive Brain Stimulation (CNBS) at Beth Israel Deaconess Medical Center and Harvard Medical School we have three distinct missions: Research, Education and Patient Care. Our research explores brain-behavior relations, brain plasticity and its modulation, employing different noninvasive brain stimulation techniques combined with careful task design, electroencephalography, and functional brain imaging. Educational efforts feature several Continuing Medical Education Courses including a week long intensive course in noninvasive brain stimulation offered 3 times per year. Our clinical program offers noninvasive brain stimulation for treatment of neuropsychiatric disorders such as depression and schizophrenia, epilepsy, and chronic pain. Clinical work also includes studies of central motor conduction time, cortical excitability, and noninvasive cortical mapping. consulting, human, transcranial magnetic stimulation, transcranial direct current stimulation is related to: Beth Israel Deaconess Medical Center Labs and Facilities SciEx_9461 http://www.tmslab.org/tmscore-equipment.php http://www.scienceexchange.com/facilities/transcranial-magnetic-stimulation-core-harvard SCR_011022 Beth Israel Deaconess Medical Center Transcranial Magnetic Stimulation Core 2026-02-14 02:08:15 0
Biospecimen Repository Access and Data Sharing
 
Resource Report
Resource Website
Biospecimen Repository Access and Data Sharing (RRID:SCR_017383) BRADS data or information resource, database Access to data from the Division of Intramural Population Health Research (DIPHR) of the Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) from completed studies, including biospecimens and ancillary data. child, health, human, development, dataset NICHD Restricted https://brads.nichd.nih.gov/AccessRequest/AccessRequest/ SCR_017383 , BRADS, Biospecimen Repository Access and Data Sharing 2026-02-14 02:06:47 0
The 10000 Immunomes
 
Resource Report
Resource Website
1+ mentions
The 10000 Immunomes (RRID:SCR_016624) 10KIP data or information resource, database Collection of reference datasets for human immunology, derived from control subjects in the NIAID ImmPort database . Available data include flow cytometry, CyTOF, multiplex ELISA, gene expression, HAI titers, clinical lab tests, HLA type, and others. collection, reference, dataset, human, immunology, control, subject, NIAID, ImmPort, database is related to: The Immunology Database and Analysis Portal (ImmPort)
is related to: NIAID
NIAID HHSN272201200028C PMID:30304689 Public, Free, Available for download, Freely available SCR_016624 10K Immunomes Project, 000 Immunomes Project, 000 Immunomes, 10 2026-02-14 02:06:31 1
Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database
 
Resource Report
Resource Website
100+ mentions
Transcriptional Regulatory Relationships Unrevealed by Sentence based Text mining database (RRID:SCR_022554) TRRUST data or information resource, database TRUSST is reference database of human transcriptional regulatory interactions.TRRUST v2 is manually curated expanded reference database of human and mouse transcriptional regulatory interactions. human and mouse transcriptional regulatory interactions, regulatory networks, transcriptional regulatory networks, human, mouse National Research Foundation of Korea ;
Brain Korea 21 PLUS program
PMID:26066708
DOI:10.1093/nar/gkx1013
Restricted https://www.grnpedia.org/trrust/v1/ SCR_022554 TRRUST database, TRRUSTv2 2026-02-14 02:06:34 140
White Adipose Atlas
 
Resource Report
Resource Website
1+ mentions
White Adipose Atlas (RRID:SCR_023625) data or information resource, atlas Single cell atlas of human and mouse white adipose tissue. white adipose tissue, adipose tissue, human, mouse NIDDK RC2 DK116691;
NIDDK 5P30 DK057521;
NIDDK F32 DK124914;
Italian Ministry of University ;
Novo Nordisk Foundation ;
Lundbeck Foundation ;
NIDDK UM1 DK126185;
Sarnoff Cardiovascular Research Foundation Fellowship ;
NHGRI 1K08 HG010155;
NHGRI 1U01 HG011719;
NIDDK P30 DK046200
PMID:35296864 Free, Freely available SCR_023625 2026-02-14 02:06:50 5
Australia Breast Cancer Tissue Bank
 
Resource Report
Resource Website
Australia Breast Cancer Tissue Bank (RRID:SCR_000926) ABCTB biomaterial supply resource, material resource A tissue bank which houses and supplies cancerous tissue for use by the research community. Along with tissue, the bank collects clinical history, lifestyle factors, breast pathology, treatment information, and follow up information. cancer, tissue bank, breast, tissue, human, clinical history, treatment information, pathology Cancer National Health and Medical Research Council of Australia ;
National Breast Cancer Foundation ;
Cancer Institute of NSW
THIS RESOURCE IS NO LONGER IN SERVICE nlx_54620 SCR_000926 2026-02-14 02:06:30 0
Colorado Assessment Tests - Symptom Validity
 
Resource Report
Resource Website
Colorado Assessment Tests - Symptom Validity (RRID:SCR_003520) CAT Symptom Validity material resource, assessment test provider THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. Memory impairment is one of the most common complaints after head injury, and accordingly, individuals may attempt to feign memory impairment or exaggerate symptoms of memory impairment. This free neuropsychological evaluation software contains some of the most common tests used to detect malingering of memory impairment. This software package contains a number of tests of declarative memory that assess recall of information that has a personal and temporal context. The typical example of declarative tests used for detecting malingering are the auditory verbal learning test and forced choice test. These tests are included in Symptom Validity along with other tests of declarative memory (e.g., prose recall, questionnaire tests). Unfortunately, classification of individuals is not completely accurate even with the use of multiple declarative memory tests. Thus, other tests that can complement previously used declarative memory measures by enhancing classification accuracy may be of great value to the neuropsychologist assessing the possibility of malingering. Your software contains two tests of nondeclarative memory that have been previously shown to be useful in the detection of malingered memory deficits (Davis et al., 1997a, 1997b). These tests take advantage of the general laypersons misunderstanding of the test performance of a truly memory impaired individual. That is, amnesic patients have been shown to perform normally on these nondeclarative memory tests and this is counterintuitive to the memory performance expectations of the general layperson. The nondeclarative tests included in Symptom Validity are two repetition priming tests of word stem completion and two tests of pattern categorization learning. Note: At this time this program will run only on Windows 98. We are currently working on a version that will run under the newer operating systems. auditory verbal learning test, craniocerebral trauma, declarative memory, disfunctional, human, memory, memory impairment, memory recall, neuropsychological assessment, nondeclarative memory, prose recall has parent organization: University of Colorado; Colorado Springs; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00213 SCR_003520 Symptom Validity 2026-02-14 02:06:57 0
Colorado Assessment Tests: n-Back
 
Resource Report
Resource Website
Colorado Assessment Tests: n-Back (RRID:SCR_003517) CAT n-Back material resource, assessment test provider THIS RESOURCE IS NO LONGER IN SERVICE, documented on July 17, 2013. The modifiable n-Back test is free software presumed to measure executive control of the updating of information in working memory. The task requires the participant to monitor some dimension (e.g. content, position, numerosity) of a temporally present sequence of items, responding when the currently presented item matches on the relevant dimension an item that was just recently presented. The match can be with an item present either 1 back, 2 back, 3 back or n back. Considerable flexibility is provided to the experimenter in specifying various parameters of the experiment (e.g. presentation rate, n back, content, position, color). The n-Back test is presumed to measure executive control of the updating of information in working memory. (Shimamura, 2000) Watter, Geffen and Geffen (2001) based on their work with the P300 event-related-potential have suggested that the n-Back is a dual task in that latencies of the P300 did not change with increasing task difficulty, that is memory load while amplitude did reflecting in their view a reallocation of attention and processing capacity away from the matching subtask. The n-Back task is one in which the participant is presented a series of stimuli at a constant rate. The task of the participant is to determine if the currently presented stimulus is similar (along some dimension) to one they have recently (usually one, two or three positions back) seen in the stream. Match criteria can be dimensions like material, position on the screen, color or some combination. CATs n-Back allows for substantial control over the position in which the material is presented (nine different positions), the nature of the material (any character or dingbat string, and any color. The experimenter can set the speed at which the sequence is presented including both the stimulus on time and the inter-stimulus interval. Participant responses can be made either using the keyboard or the mouse. At this time no normative data is available for this test. dual task, executive control, assessment, human, response to stimulus, working memory has parent organization: University of Colorado; Colorado Springs; USA THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-00212 SCR_003517 n-Back 2026-02-14 02:06:34 0
Massachusetts University Medical School RNAi Core Facility
 
Resource Report
Resource Website
Massachusetts University Medical School RNAi Core Facility (RRID:SCR_017727) RNAi Core core facility, access service resource, service resource Facility houses complete collections of human and mouse lentiviral short hairpin RNA (shRNA) libraries from Open Biosystems/GE Dharmacon, Mammalian Gene Collection (MGC) cDNA Library, and human and mouse CRISPR/Cas9 GeCKO v2 libraries from Addgene. Human, mouse, lentiviral, short, hairpin, RNA, shRNA, library, core Restricted ABRF_151 SCR_017727 RNAi Core Facility 2026-02-14 02:08:09 0
Stanford Diabetes Research Center Diabetes Immune Monitoring Core
 
Resource Report
Resource Website
Stanford Diabetes Research Center Diabetes Immune Monitoring Core (RRID:SCR_016210) DIMC, SDRC-DIMC core facility, access service resource, service resource Core facility that provides immune monitoring assays at the RNA, protein, and cellular level, as well as archiving, reporting, and data mining support for clinical and translational studies related to Diabetes. The DIMC is a specialized subcore of the Human Immune Monitoring Center (HIMC) at Stanford. diabetes, assay, immune, system, clinical, translational, human, data is related to: Stanford Diabetes Research Center Diabetes Genomics Analysis Core
is organization facet of: Stanford Diabetes Research Center
NIDDK P30 DK116074 SCR_016210 Diabetes Immune Monitoring Core, SDRC Diabetes Immune Monitoring Core 2026-02-14 02:08:30 0
Quebeck Sherbrooke University Genomic Core Facility
 
Resource Report
Resource Website
Quebeck Sherbrooke University Genomic Core Facility (RRID:SCR_017785) LGFUS core facility, access service resource, service resource Provides system for Splicing isoform Annotation. This LISA platform allows high throughput annotation and functional analysis of Alternate Splicing in humans. Splicing, isoform, annotation, LISA, platform, functional, analysis, alternate, human, service, core Restricted ABRF_395 SCR_017785 Laboratoire de genomique fonctionnelle de l'University de Sherbrooke 2026-02-14 02:08:41 0
Chicago University iPSC Core Facility
 
Resource Report
Resource Website
Chicago University iPSC Core Facility (RRID:SCR_017918) core facility, access service resource, service resource Core provides training to use latest episomal techniques to reprogram, expand and characterize human and mice iPS cells from skin or blood tissues of healthy subjects and diseased patients. Develops capability to differentiate iPS cells into specific somatic cells, such as neutrons, cardiomyocytes, and hepatocytes. Training, episomal, technique, reprogram, expand, characterize, human, mice, iPS, cell, skin, blood, tissue, healthy, diseased, patient, somatic, neuron, cardiomyocyte, hepatocyte, service, core, ABRF is listed by: ABRF CoreMarketplace ABRF_803 SCR_017918 IPSC Core Facility 2026-02-14 02:08:14 0
Massachusetts Institute of Technology Koch Institute Preclinical Modeling Core Facility
 
Resource Report
Resource Website
Massachusetts Institute of Technology Koch Institute Preclinical Modeling Core Facility (RRID:SCR_017899) core facility, access service resource, service resource Core provides service support to all MIT investigators who utilize specialized in vitro cells such as stem cells, organoids, or primary cell lines and/or novel mouse models to study human diseases such as cancer. Projects involve generation of new model system, such as CRISPR-mediated gene editing in mouse to introduce mutation that mimics one found in patients. Helps with projects required optimization of finicky cell cultures and other challenges.Provides customizable set of service options to match specific needs of each project, including consultative advice and troubleshooting, complete tissue culture and microinjection services within our facilities or hands-on training to enable investigators to perfom these experiments either at their own laboratory or within our facilities.Services Include:Gene Targeting genomic modification through traditional or CRISPR/Cas9 locus targeting, assistance with targeting strategies and vector designs;Embryonic Stem Cells generation of new ES lines from mouse strains, importation and testing of lines from outside sources, differentiation of ES lines into specific cell lineages or cell types and more;Microinjection injection of mouse ES cells into blastocysts to generate chimeras and injection of DNA, RNA or CRISPR RNPs into the pronucleus of fertilized mouse eggs to generate transgenic and edited mice;Specialized Tissue Culture establishemnt of new primary cell cultures from a tumor, tissue or organ; Isolation of fibroblasts (MEFs) from mice for culture and analysis;Tissue Culture for Xenograft and Syngenic Modeling optimization, validation and testing of cell lines for orthotopic placement into mice, coordinated with Preclinical Testing Facility;Repository of Reagent Mice Commonly used wild type mice such as C57BL/6j as well as KrasG12D-based models of cancers are maintained on campus for efficient distrubution;Training and Troubleshooting for all aspects of embryonic stem cells, primary cultures, animal breeding etc.;Serum, DMEM, LIF and other media components that have been tested and verified for use with ES cells. Preclinical, modeling, system, in vitro, cell, stem, organoid, primary, mouse, human, disease, CRISP, gene, editing, mutation, patient, microinjection, training, service, core, ABRF is listed by: ABRF CoreMarketplace Restricted ABRF_766 SCR_017899 Preclinical Modeling Facility 2026-02-14 02:08:34 0
Northwestern University Center for Translational Imaging Core Facility
 
Resource Report
Resource Website
1+ mentions
Northwestern University Center for Translational Imaging Core Facility (RRID:SCR_017878) CTI, CAMRI core facility, access service resource, service resource Core is Northwestern Radiology research facility providing translational imaging capabilities that promote pre-clinical and clinical research efforts. CTI occupies space in basement of Olson building housing imaging equipment along with research staff. Services include Cardiovascular Imaging for development, analysis and application of MRI methods providing insights into structure and function of cardiovascular system,NeuroImaging for functional MRI using spectroscopy and diffusion-weighted imaging to studying human anatomy and physiology during development and disease,Small Animal Imaging for molecular and functional imaging of biological processes in living animal models to study diseases and responses to intervention. Translational, imaging, clinical, cardiovascular, neuroimaging, functional, MRI, human, anatomy, physiology, development, disease, living, animal, model, intervention, response, service, core, ABRF is listed by: ABRF CoreMarketplace Open ABRF_719 SCR_017878 Center for Translational Imaging 2026-02-14 02:08:13 1
Fugu Genome Project
 
Resource Report
Resource Website
10+ mentions
Fugu Genome Project (RRID:SCR_013014) data or information resource, database THIS RESOURCE IS NO LONGER IN SERVICE,documented on August 16, 2019. Fugu genome is among the smallest vertebrate genomes and has proved to be a valuable reference genome for identifying genes and other functional elements such as regulatory elements in the human and other vertebrate genomes, and for understanding the structure and evolution of vertebrate genomes. This site presents version 4 of the Fugu genome, released in October 2004 by the International Fugu Genome Consortium. Fugu rubripes has a very compact genome, with less than 15 consisting of dispersed repetitive sequence, which makes it ideal for gene discovery. A draft sequence of the fugu genome was determined by the International Fugu Genome Consortium in 2002 using the ''whole-genome shotgun'' sequencing strategy. Fugu is the second vertebrate genome to be sequenced, the first being the human genome. This webpage presents the annotation made on the fourth assembly by the IMCB team using the Ensembl annotation pipeline. We are continuing with the gap filling work and linking of the scaffolds to obtain super-contigs. element, evolution, fish, fugu, functional, gene, genome, human, pufferfish, regulatory, rubripes, structure, vertebrate, bio.tools is listed by: bio.tools
is listed by: Debian
has parent organization: Institute of Molecular and Cell Biology; Singapore; Singapore
THIS RESOURCE IS NO LONGER IN SERVICE biotools:fugu-sg, nif-0000-20988 https://bio.tools/fugu-sg SCR_013014 FGP 2026-02-14 02:06:16 22
DEG - Database of Essential Genes
 
Resource Report
Resource Website
50+ mentions
DEG - Database of Essential Genes (RRID:SCR_012929) DEG data or information resource, database THIS RESOURCE IS NO LONGER IN SEVICE. Documented on August 19,2019.It hosts records of currently available essential genes among a wide range of organisms. For prokaryotes, DEG contains essential genes in more than 10 bacteria, such as E. coli, B. subtilis, H. pylori, S. pneumoniae, M. genitalium and H. influenzae, whereas for eukaryotes, DEG contains those in yeast, humans, mice, worms, fruit flies, zebra fish and the plant A. thaliana. Users can Blast query sequences against DEG, and can also search for essential genes by their functions and names. Essential gene products comprise excellent targets for antibacterial drugs. Essential genes in a bacterium constitute a minimal genome, forming a set of functional modules, which play key roles in the emerging field, synthetic biology. e. coli, essential gene, eukaryote essential gene, fruit fly, a. thaliana, b. subtilis, h. influenzae, h. pylori, human, m. genitalium, mice, prokaryote essential gene, s. pneumoniae, worm, yeast, zebra fish, FASEB list has parent organization: Tianjin University; Tianjin; China THIS RESOURCE IS NO LONGER IN SEVICE. nif-0000-02745 SCR_012929 Database of Essential Genes 2026-02-14 02:06:22 61
PhenomicDB
 
Resource Report
Resource Website
10+ mentions
PhenomicDB (RRID:SCR_013051) PhenomicDB data or information resource, database PhenomicDB is a multi-organism phenotype-genotype database including human, mouse, fruit fly, C.elegans, and other model organisms. The inclusion of gene indices (NCBI Gene) and orthologs (same gene in different organisms) from HomoloGene allows to compare phenotypes of a given gene over many organisms simultaneously. PhenomicDB contains data from publicly available primary databases: FlyBase, Flyrnai.org, WormBase, Phenobank, CYGD, MatDB, OMIM, MGI, ZFIN, SGD, DictyBase, NCBI Gene, and HomoloGene. We brought this wealth of data into a single integrated resource by coarse-grained semantic mapping of the phenotypic data fields, by including common gene indexes (NCBI Gene), and by the use of associated orthology relationships (HomoloGene). PhenomicDB is thought as a first step towards comparative phenomics and will improve the understanding of the gene functions by combining the knowledge about phenotypes from several organisms. It is not intended to compete with the much more dedicated primary source databases but tries to compensate its partial loss of depth by linking back to the primary sources. The basic functional concept of PhenomicDB is an integrated meta-search-engine for phenotypes. Users should be aware that comparison of genotypes or even phenotypes between organisms as different as yeast and man can have serious scientific hurdles. Nevertheless finding that the phenotype of a given mouse gene is described as ��similar to psoriasis�� and at the same time that the human ortholog has been described as a gene causing skin defects can lead to novelty and interesting hypotheses. Similarly, a gene involved in cancer in mammalian organisms could show a proliferation phenotype in a lower organism such as yeast and thus, give further insights to a researcher. phenotype, human, mouse, drosophila, caenorhabditis elegans, dictyostelium discoideum, yeast, zebrafish PMID:20562418 nif-0000-03274 SCR_013051 2026-02-14 02:06:41 10

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