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https://github.com/gilestrolab/ethoscope

Software R package for data analysis.Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes (RRID:SCR_021507) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-source-joystick/

Project related to studying motor behavior and decision making in mice. Open source behavior training platform for studying motor control, decision making, and reaching reaction time. Enables behavioral work to study unexplored features of action selection, motivation, and value based decisions.

Proper citation: Joystick project (RRID:SCR_021442) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/catalepsybar/

Project related to measuring of muscular rigidity that can result from several factors including Parkinsons disease, or pharmacological exposure to antipsychotics or cannabis. Provides automated apparatus for measuring catalepsy that increases measurement accuracy and reduces observer bias.Catalepsy bar test automatically measures and records time it takes for rat to remove its forelimbs from bar. 3D printed test apparatus used to make catalepsy measurements in rats more standardized and accurate.

Proper citation: Catalepsy Bar project (RRID:SCR_021439) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/open-skinner-box/

Project related to training animal behavior. Provides system which includes full behavioral apparatus and software platform. System includes software tool for data logging and analysis.

Proper citation: Skinner Box project (RRID:SCR_021437) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/optopad-and-flypad/

Project related to analysis of behavior and of neural activity. Provides FPGA code for running main board of flyPAD.

Proper citation: flyPAD project (RRID:SCR_021449) Copy   

•   Source: SciCrunch Registry

https://github.com/aarac/DeepBehavior

Software toolbox that automates taking high speed quality video to track behavior to analyze and track behavior in rodents and humans.

Proper citation: DeepBehavior (RRID:SCR_021414) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/low-cost-eye-tracking/

Project related to eye tracking system for human research.System includes open source software for accurate eye tracking. Can identify shapes such as circles, lines, and triangles.You can rotate and mirror images and also use variety of filters.Capable of processing video in real-time for optical flow. App for viewing multiple video streams from USB cameras.

Proper citation: Low Cost Open Source Eye Tracking project (RRID:SCR_021415) Copy   

•   Source: SciCrunch Registry

https://github.com/mtlippert/CAVE

Open source tool for combined analysis of head mounted calcium imaging and behavior. Used to analyze imaging data from head mounted microscopes simultaneously with behavioral data.

Proper citation: Calcium ActiVity Explorer (RRID:SCR_021498) Copy   

•   Source: SciCrunch Registry

https://github.com/video-annotator/pythonvideoannotator-module-idtrackerai

Software tool as Python Video Annotator software.Agorithm and tracking software that features two deep networks.Tracks animal identification and tracks when animals touch or cross paths in front of one another.

Proper citation: idtracker.ai (RRID:SCR_021499) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/locomouse/

Project related to study movement coordination in free walking mice. Provides noninvasive system consisting of cameras and machine learning algorithms that allow for three dimensional detection and tracking of mouse paws, tail, and nose.

Proper citation: Locomouse project (RRID:SCR_021390) Copy   

•   Source: SciCrunch Registry

https://github.com/careylab/LocoMouse

Software kinematics analysis tool used to study movement coordination and analyzing limb, head, and tail kinematics of freely walking mice.

Proper citation: LocoMouse (RRID:SCR_021397) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/deepposekit/

Project related to pose estimation and tracking.Includes software toolkit for 2D pose estimation of user defined keypoints using deep learning.Method for pose estimation developed by behavioral scientists at the Max Planck Institute of Animal Behavior.

Proper citation: DeepPoseKit project (RRID:SCR_021395) Copy   

•   Source: SciCrunch Registry

https://github.com/ncguilbeault/BonZeb

Open source, modular software tools for high resolution zebrafish tracking and analysis.Software suite of Bonsai modules for specifically tracking and analyzing zebrafish movements and integrating these data with closed loop experiments.Can be used in open loop fashion for collecting, analyzing, and integrating data from multiple sources in real time, or from offline sources for batch processing of pre-recorded data.

Proper citation: BonZeb (RRID:SCR_021392) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/ethoscopes/

Project related to analysis of behavior in Drosophila.Provides system capable of real time video tracking. System includes raspberry pi and R package for data analysis. Enables high throughput analysis of behavior in Drosophila and other animals.

Proper citation: EthoScopes project (RRID:SCR_021426) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/picamera/

Project related to tracking animals in large spaces. Picamera system allows for tracking of animals in large behavioral arenas.Open source scalable multi camera tracking system that can be used to track behavior in combination with wireless recording systems.Design is comprised of 8 overhead Raspberry Pi cameras, capable of recording at high frame rate in large field of view, recording video independently in individual Raspberry Pi microcomputers and processed using Picamera Python library.

Proper citation: Picamera project (RRID:SCR_021423) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/live-mouse-tracker/

Project related to monitoring social interactions of mice. Provides real time behavioral analysis system for groups of mice.System includes random forest machine learning process, RFID sensors and infrared depth RGB-D camera.System includes software tool for Live Mouse Tracker analysis.

Proper citation: Live Mouse Tracker project (RRID:SCR_021421) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/d-track/

Project related to tracking animal behavior. Provided system includes two cameras and software package to track aquatic animals within captivity.Semi automatic 3D video tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins.

Proper citation: D-Track project (RRID:SCR_021389) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/openvape/

Project related to conducting research on effects of nicotine vapor. Provides open source chamber system for rodents to experience regulated nicotine vapor exposure from JUUL electronic cigarette.Vapor exposure apparatus comprised of Arduino Uno microcontroller that relays coded instructions to H-bridge motor controller.H-bridge then sends specific signals to motors that regulate produced vapor sent to exposure chambers.

Proper citation: OpenVape project (RRID:SCR_021485) Copy   

•   Source: SciCrunch Registry

https://edspace.american.edu/openbehavior/project/motorized-swivel/

Project related to neural recordings such as electrophysiology, calcium imaging, and optogenetics. Provides 3D-printed, motorized commutator for neural recordings of small animals in vivo.Open source motorized swivel for in vivo neural and behavioral recordings.Device operates independently of data acquisition system, and it can be controlled through any popular platform such as Arduino or Raspberry Pi.

Proper citation: An open source motorized swivel for in vivo neural and behavioral recordings project (RRID:SCR_021482) Copy   

•   Source: SciCrunch Registry

https://github.com/SainsburyWellcomeCentre/Pyper

Software tool for motion tracking.Provides real time or pre recorded motion tracking of specimen in open field. Used to track path of object of interest in live feed from camera or recorded video. Used to track rodents in open field maze as well as retina of mice.New version v2 of Pyper allows to customise image processing to track different kind of objects.

Proper citation: Pyper (RRID:SCR_021511) Copy   

•   Source: SciCrunch Registry