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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Website Status Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core
 
Resource Report
Resource Website
1+ mentions
Tulane Stem Cell Research and Regenerative Medicine Tissue Culture Core (RRID:SCR_007342) Tulane Tissue Culture Core biomaterial supply resource, cell repository, material resource The Stem Cell Research and Regenerative Medicine''s Tissue Culture Core provides cells for research use within the department, as well as for distribution to other facilities. The core obtains hMSCs from bone marrow donor samples and expands these cells for research use. The hMSC''s are also characterized for bone, fat and cartilage differentiation, and are stored on site for use. The Tissue Culture Core also handles the expansion and characterization of mouse and rat MSC''s. The animal cells are cultured in a separate area, and never interact with human derived cells. We also have a supply of hMSC''s marked with GFP+, Mito Red and Mito Blue available. stem cell, mesenchymal stem cell, marrow stromal cell, frozen, adult, bone marrow, adipose tissue, bone, fat, cartilage is listed by: One Mind Biospecimen Bank Listing
has parent organization: Tulane University School of Medicine; Louisiana; USA
United States Department of DefenseBlueprint for Neuroscience Research ;
NSF ;
NIH
Public: The Tissue Culture Core provides cells for research use within the department, As well as for distribution to other facilities. nif-0000-00246 http://www.som.tulane.edu/gene_therapy/distribute.shtml SCR_007342 Tulane Stem Cell Research Regenerative Medicine Tissue Culture Core 2026-02-17 10:01:14 1
University of Delaware Sequencing and Genotyping Center Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Delaware Sequencing and Genotyping Center Core Facility (RRID:SCR_012230) UD DNA Sequencing & Genotyping Center, UD DNA Sequencing and Genotyping Center service resource, access service resource, core facility Provides genomics and molecular biology services for University of Delaware research groups and outside users.Supports genomic research through established expertise with genomics technologies. USEDit, genomics services, molecular biology services, , ABRF is listed by: ScienceExchange
is listed by: ABRF CoreMarketplace
is related to: University of Delaware Labs and Facilities
has parent organization: University of Delaware; Delaware; USA
NSF 1757353;
NSF IIA 1301765;
NSF EPS 081425
Open SciEx_10927, ABRF_5 https://coremarketplace.org/?FacilityID=5
http://www.scienceexchange.com/facilities/dna-sequencing-genotyping-center-udel
SCR_012230 University of Delaware DNA Sequencing and Genotyping Center, Delaware University Sequencing and Genotyping Center Core Facility, University of Delaware DNA Sequencing & Genotyping Center 2026-02-17 10:02:10 6
Brown University Genomics Core Facility
 
Resource Report
Resource Website
Brown University Genomics Core Facility (RRID:SCR_012217) Brown Genomics Core Facility service resource, access service resource, core facility Provides genomics and proteomics equipment to researchers at Brown University and to entire Rhode Island research community, as well as assistance with experimental design, trouble shooting, and data analysis. Offers Affymetrix microarray and Illumina NextGeneration services to academic community and external customers. dna microarray, microrna microarray, genechip, mirna array, affymetrix, rna microarray, agilent bioanalyzer, bioinformatics, chromatin immunoprecipitation sequencing, chip next generation sequencing, illumina, next generation sequencing, next generation sequencing, data analysis, real time qpcr, rna sequencing is listed by: ScienceExchange
is related to: Brown University Labs and Facilities
has parent organization: Brown University; Rhode Island; USA
NCRR P30 RR031153;
NCRR P20 RR01 8728;
NCRR S10 RR02763;
P30GM103410 ;
EPSCoR 0554548;
NSF 0554548
Available to external user SciEx_10771 https://www.brown.edu/research/facilities/genomics/ SCR_012217 Brown, Genomics, Genomics Core Facility, Brown University, BU 2026-02-17 10:02:02 0
WUSTL NNIN - Nano Research Facility
 
Resource Report
Resource Website
WUSTL NNIN - Nano Research Facility (RRID:SCR_012674) WUSTL NNIN - NRF, WUSTL NRF service resource, access service resource, core facility THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 15,2024. Nano Research Facility (NRF) at Washington University in St. Louis is a NNIN nodal facility supported by the National Science Foundation. It cultivates an open, shared research, and education environment that brings researchers across disciplines together, particularly in the emerging area of nanomaterials with applications in the energy, environment, and biomedical fields. The mission is to be a resource to the scientific and technical community for the advancement of nanoscience and nanotechnology in a safe and environmentally benign manner. NRF includes a micro- and nano-fabrication lab (clean room), surface characterization lab, particle technology lab, and imaging lab with a focus on bio-imaging. NRF provides unique technical expertise in: Knowledge-based synthesis of nanostructured materials Particle instrumentation tools for toxicity studies Non-invasive imaging modalities for biological applications Clean Energy Applications Energy and Environmental nanotechology Environmental Health and Safety As a member of the National Nanotechnology Infrastructure Network (NNIN), supported by the National Science Foundation, NRF is available to both academic and industrial users nation-wide and across the globe. is listed by: ScienceExchange
has parent organization: Washington University in St. Louis; Missouri; USA
NSF THIS RESOURCE IS NO LONGER IN SERVICE SciEx_8808 SCR_012674 Washington University in St. Louis National Nanotechnology Infrastructure Network - Nano Research Facility, Washington University in St. Louis NNIN - Nano Research Facility 2026-02-17 10:02:15 0
Early Indicators of Later Work Levels Disease and Death (EI) - Union Army Samples Public Health and Ecological Datasets
 
Resource Report
Resource Website
1+ mentions
Early Indicators of Later Work Levels Disease and Death (EI) - Union Army Samples Public Health and Ecological Datasets (RRID:SCR_008921) Early Indicators of Later Work Levels Disease and Death, EI project data or information resource, data set A dataset to advance the study of life-cycle interactions of biomedical and socioeconomic factors in the aging process. The EI project has assembled a variety of large datasets covering the life histories of approximately 39,616 white male volunteers (drawn from a random sample of 331 companies) who served in the Union Army (UA), and of about 6,000 African-American veterans from 51 randomly selected United States Colored Troops companies (USCT). Their military records were linked to pension and medical records that detailed the soldiers������?? health status and socioeconomic and family characteristics. Each soldier was searched for in the US decennial census for the years in which they were most likely to be found alive (1850, 1860, 1880, 1900, 1910). In addition, a sample consisting of 70,000 men examined for service in the Union Army between September 1864 and April 1865 has been assembled and linked only to census records. These records will be useful for life-cycle comparisons of those accepted and rejected for service. Military Data: The military service and wartime medical histories of the UA and USCT men were collected from the Union Army and United States Colored Troops military service records, carded medical records, and other wartime documents. Pension Data: Wherever possible, the UA and USCT samples have been linked to pension records, including surgeon''''s certificates. About 70% of men in the Union Army sample have a pension. These records provide the bulk of the socioeconomic and demographic information on these men from the late 1800s through the early 1900s, including family structure and employment information. In addition, the surgeon''''s certificates provide rich medical histories, with an average of 5 examinations per linked recruit for the UA, and about 2.5 exams per USCT recruit. Census Data: Both early and late-age familial and socioeconomic information is collected from the manuscript schedules of the federal censuses of 1850, 1860, 1870 (incomplete), 1880, 1900, and 1910. Data Availability: All of the datasets (Military Union Army; linked Census; Surgeon''''s Certificates; Examination Records, and supporting ecological and environmental variables) are publicly available from ICPSR. In addition, copies on CD-ROM may be obtained from the CPE, which also maintains an interactive Internet Data Archive and Documentation Library, which can be accessed on the Project Website. * Dates of Study: 1850-1910 * Study Features: Longitudinal, Minority Oversamples * Sample Size: ** Union Army: 35,747 ** Colored Troops: 6,187 ** Examination Sample: 70,800 ICPSR Link: http://www.icpsr.umich.edu/icpsrweb/ICPSR/studies/06836 late adult human, male, caucasian, african-american, veteran, military, medical, socioeconomic, civil war, american civil war, cause of death, census data, demographic, disease, health status, labor force, medical record, midlife, military pension, pension, military recruitment, military service, mortality rate, nineteenth century, nutrition, socioeconomic status, twentieth century, union army, census is related to: National Archive of Computerized Data on Aging (NACDA)
has parent organization: University of Chicago; Illinois; USA
Aging NIA PO1 AG10120;
NSF SBR 9114981
Publicly available from ICPSR; copies on CD-ROM may be obtained from the CPE, Which also maintains an interactive Internet Data Archive and Documentation Library. nlx_151822 http://www.cpe.uchicago.edu/ SCR_008921 Public Health and Ecological Datasets, Aging of Veterans of the Union Army, Early Indicators of Later Work Levels Disease and Death ������?? Union Army Samples 2026-02-17 10:01:27 1
Sol Genomics Network - Bulk download
 
Resource Report
Resource Website
Sol Genomics Network - Bulk download (RRID:SCR_007161) data or information resource, data set Allows users to download Unigene or BAC information using a list of identifiers or complete datasets with FTP., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. database, dataset, unigene, gene, bac, genomics, clone, array spot, unigene id, bac ends is related to: SGN
has parent organization: Boyce Thompson Institute for Plant Research
NSF 0820612;
USDA CSREES
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-30227 SCR_007161 SGN bulk download 2026-02-17 10:01:13 0
Montana State University Functional Genomics Core Facility
 
Resource Report
Resource Website
Montana State University Functional Genomics Core Facility (RRID:SCR_009939) service resource, access service resource, core facility Core provides instrumentation and support for academic investigators throughout Montana and Rocky Mountain west. For most instrumentation, facility provides instruction and supervision followed by independent user access. For those doing Affymetrix microarrays, facility can also accept RNA samples and provides full service processing. Assists with experimental planning and grantmanship phases. affymetrix array, nucleic acid isolation, nucleic acid microarray assay, gene expression analysis assay, transcription profiling assay is listed by: Eagle I
has parent organization: Montana State University
MT INBRE ;
NSF ;
MJ Murdock Charitable Trust
Restricted nlx_156407 http://bugserv2.core.montana.edu/index.php?page=functional-genomics-core-facility http://cores.montana.edu/genomics http://montana.eagle-i.net/i/0000012a-2502-57bb-f94c-e32480000000 SCR_009939 MSU Functional Genomics Core Facility 2026-02-17 10:01:20 0
Honey Bee Brain EST Project
 
Resource Report
Resource Website
1+ mentions
Honey Bee Brain EST Project (RRID:SCR_002389) Bee-ESTdb biomaterial supply resource, material resource A database integrating data from the bee brain EST sequencing project with data from sequencing and gene research projects from other organisms, primarily the fruit fly Drosophila melanogaster. The goal of Bee-ESTdb is to provide updated information on the genes of the honey bee, currently using annotation primarily from flies to suggest cellular roles, biological functions, and evolutionary relationships. The site allows searches by sequence ID, EST annotations, Gene Ontology terms, Contig ID and using BLAST. Very nice resource for those interested in comparative genomics of brain. A normalized unidirectional cDNA library was made in the laboratory of Prof. Bento Soares, University of Iowa. The library was subsequently subtracted. Over 20,000 cDNA clones were partially sequenced from the normalized and subtracted libraries at the Keck Center, resulting in 15,311 vector-trimmed, high-quality, sequences with an average read length of 494 bp. and average base-quality of 41. These sequences were assembled into 8966 putatively unique sequences, which were tested for similarity to sequences in the public databases with a variety of BLAST searches. The Clemson University Genomics Institute is the distributor of these public domain cDNA clones. For information on how to purchase an individual clone or the entire collection, please contact www.genome.clemson.edu/orders/ or generobi (at) life.uiuc.edu. expressed sequence tag, brain, behavior, cdna, blast, gene, annotation, microarray, gene expression, comparative genomics, cdna clone, resource:genbank is listed by: One Mind Biospecimen Bank Listing
is related to: One Mind Biospecimen Bank Listing
is related to: Gene Ontology
has parent organization: University of Illinois at Urbana-Champaign; Illinois; USA
NSF ;
University of Illinois Critical Research Initiatives Program ;
Burroughs Wellcome Fund
PMID:11932240 Free nif-0000-00118 SCR_002389 Honeybee EST Project 2026-02-17 09:59:47 5
CGSC
 
Resource Report
Resource Website
10+ mentions
CGSC (RRID:SCR_002303) CGSC biomaterial supply resource, material resource The CGSC Collection contains only non-pathogenic BSL-1 laboratory strains, primarily genetic derivatives of Escherichia coli K-12, the laboratory strain widely used in genetic and molecular studies, but a few B strains. The CGSC Database of E. coli genetic information includes genotypes and reference information for the strains in the CGSC collection, the names, synonyms, properties, and map position for genes, gene product information, and information on specific mutations and references to primary literature. The public version of the database includes this information and can be queried directly via this CGSC DB WebServer. The collection includes cultures of wild-type contributed from a number of laboratories and a few thousand derivatives carrying one or up to 29 mutations from among 3500 mutations in (or included in deletions spanning) more than 1300 different loci. Some combinations were constructed particularly for mapping purposes and are still used for teaching and for rapid localization, some for manifestation of a particular phenotype, some strains for transferring a particular region or for complementation analysis. Some plasmids, e.g., the Clarke and Carbon collection, F-primes, a number of toolkit plasmids, and a few classic plasmids are included, but it is not a comprehensive collection of plasmids. Additionally, we have recently acquired most of the strains from the Keio Collection of systematic individual gene knockout (deletion/kan insertion) strains. e. coli. escherichia coli, chromosome, culture, genotype, interval, k-12, linkage map, locus, mutation, non-pathogenic, phenotype, plasmid, prokaryote, strain, wild-type, auxotrophic, amino acids, wanner lambda red, gene disruption, keio knockout is listed by: One Mind Biospecimen Bank Listing
has parent organization: Yale University; Connecticut; USA
NSF DBI-0742708;
User fees
nif-0000-21083 SCR_002303 The Coli Genetic Stock Center, E. coli Genetic Stock Center, CGSC - The Coli Genetic Stock Center, Coli Genetic Stock Center 2026-02-17 09:59:54 26
National High Magnetic Field Laboratory High B/T Core Facility
 
Resource Report
Resource Website
National High Magnetic Field Laboratory High B/T Core Facility (RRID:SCR_017360) B/T service resource, access service resource, core facility Facility to conduct experiments in high magnetic fields up to 15 tesla and at very low temperatures down to 0.4 mK simultaneously. Located at University of Florida in Gainesville, it is operated as part of Physics Department Microkelvin Laboratory. Magnetic, field, temperature is related to: University of Florida; Florida; USA NSF DMR-1644779;
Florida State ;
NIH ;
Department of Energy ;
Department of Defense
Restricted SCR_017360 NHMF Laboratory High B/T Facility, High B/T (magnetic field / temperature) Facility, High B/T Facility 2026-02-17 10:03:13 0
National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility
 
Resource Report
Resource Website
500+ mentions
National High Magnetic Field Laboratory Advanced Magnetic Resonance Imaging and Spectroscopy Core Facility (RRID:SCR_017362) National MagLab NMR, MagLab NMR-MRI/s, service resource, access service resource, core facility Facility offers array of solid state, solution state, MRI/S (animal and human), MR microscopy and diffusion capabilities and techniques. Among their machines is 900 MHz 105 mm bore magnet. Techniques and instruments are available at two different MagLab facilities in Florida, NMR-MRI/S Facility at MagLab headquarters near Florida State University in Tallahassee and Advanced Magnetic Resonance Imaging and Spectroscopy Facility (AMRIS) housed within McKnight Brain Institute at University of Florida in Gainesville. Nuclear Magnetic Resonance, Magnetic Resonance Imaging, Magnetic Resonance Imaging/ Spectroscopy, spectrometer, scanner, bore, magnet is related to: University of Florida; Florida; USA Florida State ;
Department of Defense ;
Department of Energy ;
NSF DMR-1644779;
NSF DMR-2128556;
NSF DMR-1157490
Restricted SCR_017363 https://amris.mbi.ufl.edu/
https://nationalmaglab.org/user-facilities/nmr-mri
SCR_017362 , Nuclear Magnetic Resonance and Magnetic Resonance Imaging / Spectroscopy Facility, Advanced Magnetic Resonance Imaging and Spectroscopy Facility, NMR Facility, National High Magnetic Field NMR-MRI/S Core Facility, Advanced Magnetic Resonance Imaging and Spectroscopy 2026-02-17 10:02:51 859
University of Delaware BioImaging Center Core Facility
 
Resource Report
Resource Website
1+ mentions
University of Delaware BioImaging Center Core Facility (RRID:SCR_017814) service resource, access service resource, core facility Microscopy facility that houses equipment including confocal microscopes: LSM780 confocal microscope (Located at CBBI),LSM880 confocal microscope (Located at DBI 117),electron microscopes and their accessory instrumentation:Thermo Scientific Apreo VS SEM microscope,Hitachi S-4700, Leica EM ACE600 and Tousimis Autosamdri-815B,CX7 high content analysis system. Our staff has technical expertise across different microscopy platforms and methodologies. Microscopy, bioimaging, confocal, electron, microscope, analysis, service, core is listed by: ABRF CoreMarketplace
has parent organization: University of Delaware; Delaware; USA
NIGMS P20 GM103446;
NSF IIA 1301765;
State of Delaware ;
NCRR S10 RR027273;
NIH Office of the Director S10 OD016361;
NIH Office of the Director S10 OD025165;
NIGMS P20 GM113125
Open ABRF_537 https://coremarketplace.org/?FacilityID=537&citation=1 SCR_017814 Delaware University BioImaging Center Core Facility, University of Delaware Bio-Imaging Center 2026-02-17 10:03:40 1
Delaware University Surface Analysis Core Facility
 
Resource Report
Resource Website
Delaware University Surface Analysis Core Facility (RRID:SCR_017796) service resource, access service resource, core facility Core provides consulting and services in X-ray Photoelectron Spectroscopy (XPS or ESCA), Time-of-Flight Secondary-Ion Mass Spectrometry (TOF-SIMS), X-ray Photoelectron Imaging, Auger Electron Spectroscopy (AES), Scanning Auger Microscopy or Imaging (SAM), Secondary-Electron Microscopy (SEM), Ion-Scattering Spectroscopy (ISS or LEIS), Scanning Probe Microscopy (STM and AFM). Surface, analysis, X-ray, photoelectron, spectroscopy, ion, mass, spectrometry, imaging, Auger, microscopy, scattering, scanning, probe, service, core NSF Open ABRF_439 SCR_017796 Surface Analysis Facility 2026-02-17 10:03:39 0
Northwestern University Central Laboratory for Materials Mechanical Properties Core Facility
 
Resource Report
Resource Website
1+ mentions
Northwestern University Central Laboratory for Materials Mechanical Properties Core Facility (RRID:SCR_017877) CLaMMP service resource, access service resource, core facility Core provides mechanical testing machines and accessories for conducting educational, research, and outreach experiments on most solid materials. Material, mechanical, property, testing, solid, service, core, ABRF is listed by: ABRF CoreMarketplace NSF DMR 1720139 Open ABRF_727 SCR_017877 Central Laboratory for Materials Mechanical Properties 2026-02-17 10:03:41 3
University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility
 
Resource Report
Resource Website
50+ mentions
University of California at Berkeley Cancer Research Laboratory Molecular Imaging Center Core Facility (RRID:SCR_017852) MIC service resource, access service resource, core facility Microscopy core specializing in laser based fluorescence techniques. Offers training and expertise in 20 different microscope systems, including live cell and in vivo imaging, laser scanning (LSM) and spinning disk (SDC) confocal, multi-photon (2p), fluorescent lifetime imaging (FLIM), light-sheet microscopy (SPIM), super resolution (Airyscan), slide scanning and patterned illumination for optogenetic manipulation and readout. Provides offline computer analysis workstations for image processing, visualization and analysis, including GPU workstations. MIC operates in 3 different buildings on campus, with primary locations in Life Sciences Addition (LSA), North-side core in Barker Hall, and small outpost in Li Ka Shing Center for Biomedical and Health Sciences (LKS).Provides equipment in categories:Confocal and multi photon laser scanning microscopes,Spinning disk confocal microscopes,Lightsheet (SPIM) microscopes,Epifluorescence/widefield scopes and Computer workstations. Molecular, imaging, microscopy, system, laser, based, fluorescent, technique, live, cell, in vivo, slide, scanning, image, processing, visualization, analysis, service, core Helen Wills Neuroscience Institute ;
NSF DBI1041078;
Gordon and Betty Moore Foundation ;
NCRR S10 RR028971;
Biological Faculty Research Fund ;
Fidelity Foundation Award ;
NCRR S10 RR027696;
NEI R01 EY015514;
NSF DBI 0116016
Open ABRF_659 SCR_017852 CRL Molecular Imaging Center 2026-02-17 10:02:58 64
Donald Danforth Plant Science Center Advanced Bioimaging Laboratory Core Facility
 
Resource Report
Resource Website
10+ mentions
Donald Danforth Plant Science Center Advanced Bioimaging Laboratory Core Facility (RRID:SCR_018951) service resource, access service resource, core facility Core provides instruments for live cell imaging including Leica SP8-X confocal microscope and other fluorescence microscopes. Facility provides workstation for confocal image processing, ancillary equipment required for transmission electron microscopy. Services are provided as self services after user training by IMF staff or as full services done by core facility staff. Live cell imaging, Leica SP8-X, confocal microscope, flulorescent microscope, confocal image processing, transmission electron microscopy, ABRF, ABRF is listed by: ABRF CoreMarketplace
has parent organization: Donald Danforth Plant Science Center
NSF ;
NIH
ABRF_1026 https://www.scienceexchange.com/labs/advanced-bioimaging-laboratory
https://coremarketplace.org/?FacilityID=1026
SCR_018951 Advanced Bioimaging Laboratory, Donald Danforth Plant Science Center Integrated Microscopy Facility 2026-02-17 10:03:50 20
University of Colorado Boulder High Performance Computing PetaLibrary Core Facility
 
Resource Report
Resource Website
10+ mentions
University of Colorado Boulder High Performance Computing PetaLibrary Core Facility (RRID:SCR_019299) PetaLibrary service resource, access service resource, core facility Provides service to support storage, archival, and sharing of research data. Available at subsidized cost to any researcher affiliated with University of Colorado Boulder. USEDit, ABRF, research data support storage, research data archival, research data sharing is listed by: ABRF CoreMarketplace
is related to: USEDit
has parent organization: University of Colorado Boulder; Colorado; USA
NSF ACI-1532235;
NSF ACI-1532236
Restricted ABRF_1097 https://coremarketplace.org/?FacilityID=1097 SCR_019299 Colorado University at Boulder High Performance Computing PetaLibrary Core Facility, High Performance Computing - CU PetaLibrary, University of Colorado at Boulder High Performance Computing PetaLibrary Core Facility 2026-02-17 10:03:40 22
FlowCal
 
Resource Report
Resource Website
1+ mentions
FlowCal (RRID:SCR_018140) software application, data processing software, software resource Open source software tool for automatically converting flow cytometry data from arbitrary to calibrated units. Can be run using intuitive Microsoft Excel interface, or customizable Python scripts. Software accepts Flow Cytometry Standard (FCS) files as inputs and is compatible with different calibration particles, fluorescent probes, and cell types. Automatically gates data, calculates common statistics, and produces plots. Converting flow cytometry data, arbitrary unit, calibrated unit, data gating, statistic, plot, data, bio.tools is listed by: Debian
is listed by: bio.tools
NSF EFRI 1137266;
NSF MCB 1244135;
Office of Naval Research MURI N000141310074;
Office of Naval Research YIP N000141410487;
NIAID R21 AI115014;
Welch Foundation ;
NSF Graduate Research Fellowship DGE 0940902;
NDSEG Fellowship
PMID:27110723 Free, Available for download, Freely available biotools:flowcal https://bio.tools/flowcal SCR_018140 Python Flow Cytometry Calibration Library 2026-02-17 10:03:44 5
ScaffMatch
 
Resource Report
Resource Website
1+ mentions
ScaffMatch (RRID:SCR_017025) software application, data processing software, software resource Software tool as scaffolding algorithm based on maximum weight matching able to produce high quality scaffolds from next generation sequencing data (reads and contigs). Able to handle reads with both short and long insert sizes. scaffolding, algorithm, maximum, weight, matching, next, generation, sequencing, data, read, contig, bio.tools uses: Python Programming Language
is listed by: OMICtools
is listed by: Debian
is listed by: bio.tools
has parent organization: Georgia State University; Georgia; USA
NSF IIS 0916401 PMID:25890305 Free, Available for download, Freely available biotools:scaffmatch, OMICS_08198 http://alan.cs.gsu.edu/NGS/?q=content/scaffmatch
https://bio.tools/scaffmatch
SCR_017025 2026-02-17 10:02:47 1
CloudReg
 
Resource Report
Resource Website
CloudReg (RRID:SCR_022795) image analysis software, software application, data processing software, software resource Software automated, terascale, cloud based image analysis pipeline for preprocessing and cross modal, nonlinear registration between volumetric datasets with artifacts. Automatic terabyte scale cross modal brain volume registration. brain volume, nonlinear registration, automatic terabyte scale, cross modal brain volume registration, image analysis pipeline, volumetric datasets with artifacts is used by: BICCN NIA R01 AG066184;
NSF EEC 1707298;
NIMH U19MH114821;
Kavli Neuroscience Discovery Institute ;
Karen Toffler Charitable Trust ;
NIMH R01 MH099647;
NIMH K08MH113039;
NIDA 1K99DA050662;
AP Giannini Foundation ;
NINDS K99 NS116122;
NIA P01AG009973;
Johns Hopkins University Kavli Neuroscience Discovery Institute Postdoctoral Fellowship ;
Microsoft Research
PMID:34253927 Free, Available for download, Freely available https://github.com/neurodata/CloudReg/ SCR_022795 2026-02-17 10:03:45 0

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