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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Freibox Resource Report Resource Website |
Freibox (RRID:SCR_023918) | software resource, source code | Versatile open source behavioral system for investigating neuronal correlates of behavioral flexibility via 1-Photon Imaging in freely moving mice. Behavioral testing platform consists of FreiBox, novel low-cost Arduino behavioral setup, controlled by custom Python interface and integrates new licking sensor (strain gauge lickometer) for controlling spatial licking behavioral tasks. | Behavioral testing platform, OpenBehavior, strain gauge lickometer, licking sensor, controlling spatial licking, behavioral task, freely moving mice, |
is listed by: OpenBehavior is related to: commutator has parent organization: University of Freiburg; Baden-Wurttemberg; Germany |
PMID:37105720 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/freibox-and-an-open-source-commutator/ | SCR_023918 | 2026-02-14 02:08:40 | 0 | ||||||||
|
Lick Instance Quantifier Home cage Device Resource Report Resource Website 1+ mentions |
Lick Instance Quantifier Home cage Device (RRID:SCR_023802) | LIQ HD | software resource, source code, instrument resource | Arduino code, 3D print design files, and tutorial video on how to build LIQ HD system. Open source tool for recording undisturbed two-bottle drinking behavior in home cage environment. All designs and software are open source to allow other researchers to build on the system and adapt LIQ HD to their animal home cages. | OpenBehavior, LIQ HD system, recording behavior, undisturbed two-bottle drinking behavior, | is listed by: OpenBehavior | PMID:36997312 | Free, Available for upload, Freely available | https://edspace.american.edu/openbehavior/project/liq-hd/ | SCR_023802 | , LIQ HD system, LIQ HD: Lick Instance Quantifier Home cage Device | 2026-02-14 02:08:39 | 2 | ||||||
|
BrainWAVE Resource Report Resource Website 1+ mentions |
BrainWAVE (RRID:SCR_024396) | software resource, source code, instrument resource | Code to program and run flicker stimulation on BrainWAVE stimulator device. This brain oscillation stimulating software can be adapted across subjects and integrated into variety of experimental designs like electrophysiology, neuroimaging, EEG, MRI. Flexible method for noninvasive stimulation of brain rhythms across species. Used to measure effects of rhythmic brain activity on behavior. | OpenBehavior, Open source, noninvasive sensory flicker, deep brain stimulation, BrainWAVE stimulator device, measure effects of rhythmic brain activity, behavior | is listed by: OpenBehavior | PMID:36754625 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/brainwave/ | SCR_024396 | , Brain Wide-spectrum Audio/Visual Exposure, BrainWAVE: Noninvasive Rhythm Stimulation | 2026-02-14 02:08:52 | 6 | |||||||
|
AnimalTA Resource Report Resource Website 1+ mentions |
AnimalTA (RRID:SCR_023784) | software resource, source code | Software video tracking tool for tracking and analysing animal movement in different environments. | OpenBehavior, video tracking, tracking and analysing animal movement, animal movement in different environments, | is listed by: OpenBehavior | DOI:10.1111/2041-210X.14115 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/animalta/ | SCR_023784 | Animal Tracking and Analysis | 2026-02-14 02:08:51 | 1 | |||||||
|
HFOApp Resource Report Resource Website |
HFOApp (RRID:SCR_024864) | data analysis software, software resource, data processing software, software application | Software for detecting and identifying high frequency oscillations observed in EEG recordings. MATLAB based graphical user interface for High Frequency Oscillation marking. | OpenBehavior, High Frequency Oscillation marking, detecting and identifying high frequency oscillations, EEG recordings, | is listed by: OpenBehavior | PMID:34544760 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/hfoapp/ | SCR_024864 | High Frequency Oscillation App | 2026-02-14 02:08:35 | 0 | |||||||
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PyBehave Resource Report Resource Website |
PyBehave (RRID:SCR_025406) | software resource, source code, software application | Open source software interface and framework for controlling behavioral experiments in neuroscience and psychology. Python-based framework for designing and controlling behavioral experiments in animals. Used to develop, perform, and control behavioral tasks. | OpenBehavior, controlling behavioral experiments, neuroscience and psychology experiments, control behavioral tasks, behavioral experiments in animals, | is listed by: OpenBehavior | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/pybehave/ | SCR_025406 | 2026-02-14 02:09:02 | 0 | |||||||||
|
ghostipy Resource Report Resource Website |
ghostipy (RRID:SCR_026231) | data processing software, data analysis software, source code, time-series analysis software, software application, software resource, 1d time-series analysis software | Software signal processing and spectral analysis toolbox designed for local field potential recordings. | OpenBehavior, neuroscience, signal processing, spectral analysis, local field potential recordings, | is listed by: OpenBehavior | DOI:10.1523/ENEURO.0202-21.2021 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/ghostipy/ | SCR_026231 | 2026-02-14 02:09:11 | 0 | ||||||||
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SaLSa Resource Report Resource Website |
SaLSa (RRID:SCR_026182) | software resource, source code, software toolkit | Software MATLAB package for analyzing and categorizing behaviors using pose estimation data. Integrates semi-automatic labeling with machine learning, specifically Long Short-Term Memory neural networks, to classify behavioral "syllables” (distinct, repeatable behaviors). Combinatory approach of semi-automatic labeling and long short-term memory to classify behavioral syllables. | OpenBehavior, semi-automatic labeling, long short-term memory, classify behavioral syllables, behavior, pose estimation data, | is listed by: OpenBehavior | PMID:37989587 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/salsa/ | SCR_026182 | 2026-02-14 02:08:57 | 0 | ||||||||
|
NC4gate Resource Report Resource Website |
NC4gate (RRID:SCR_026445) | software resource, source code | Code for testing and operating NC4gate modules of modular gate system for autonomous control of rodent behavior. Fully customizable gate system that can be used in behavioral experiments involving rodent mazes (T-maze, Y-maze, radial arm, etc.). | OpenBehavior, modular gate system, autonomous control of rodent behavior, behavioral experiments, rodent mazes, | is listed by: OpenBehavior | DOI:10.1101/2024.11.22.624912 | Free, Available for download, Freely available | https://osf.io/uy7ez/ https://edspace.american.edu/openbehavior/project/nc4gate/ |
SCR_026445 | 2026-02-14 02:09:02 | 0 | ||||||||
|
ArUco Resource Report Resource Website 10+ mentions |
ArUco (RRID:SCR_026572) | software resource, source code, instrument resource | Automated rodent behavioral scoring system, complete with 3D design files and code/software. System monitors behavioral engagement using open-source software. 3D design files and necessary software has been made available, as well as code that can be used for data analysis. | OpenBehavior, Aruco marker based tracking, pose estimation, rodent behavioral session, | is listed by: OpenBehavior | NINDS R01NS110823; United States (US) Department of Veterans Affairs Rehabilitation Research and Development Service ; University of Texas at Dallas |
DOI:10.1523/ENEURO.0500-23.2024 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/aruco-markers/ | SCR_026572 | Augmented Reality University of Cordoba, Aruco | 2026-02-14 02:09:05 | 14 | ||||||
|
STPoseNet Resource Report Resource Website |
STPoseNet (RRID:SCR_026834) | software resource, source code | Source code for pose recognition model for laboratory mice based on yolov8. Real-time spatiotemporal network model for robust mouse pose estimation. | OpenBehavior, spatiotemporal network model, mouse pose estimation, | is listed by: OpenBehavior | National Natural Science Foundation of China | PMID:38711440 | Free, Available for download, Freely available | https://edspace.american.edu/openbehavior/project/stposenet/ | SCR_026834 | 2026-02-14 02:09:48 | 0 | |||||||
|
Mousebytes Resource Report Resource Website 1+ mentions |
Mousebytes (RRID:SCR_017904) | data repository, storage service resource, data or information resource, service resource, database | Open access database for all cognitive data collected from touchscreen related tasks. Performs data comparison and interactive data visualization for any data uploaded onto the site. There are also guidelines and video tutorials available. | Data, mouse, cognition, imaging, genomics, integration, bio.tools, OpenBehavior |
is listed by: Debian is listed by: bio.tools is listed by: OpenBehavior has parent organization: Western University; Ontario; Canada |
Weston Brain Institute (Canada) ; Canadian Institute of Health Research ; NSERC ; Alzheimer’s Society of Canada ; Canadian First Research Excellence Fund (BrainsCAN) ; Brain Canada |
PMID:31825307 | Free, Freely available | SCR_021549, SCR_021598, r3d100013886, biotools:Mousebytes | https://bio.tools/MouseBytes https://edspace.american.edu/openbehavior/project/touchscreen-cognition-mousebytes/ https://doi.org/10.17616/R31NJN7I |
SCR_017904 | MouseBytes | 2026-02-14 02:03:28 | 4 | |||||
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Spike Forest project Resource Report Resource Website |
Spike Forest project (RRID:SCR_021472) | data or information resource, portal, project portal | Project related to neural data analysis. Provides open-source and reproducible software suite that benchmarks performance of automated spike sorting algorithms across extensive, curated database of ground truth electrophysiological recordings, displaying results interactively on continuously updating website. | Validating automated neural spike sorters, electrophysiological recordings, spike sorting codes, spike sorting analysis, OpenBehavior |
is listed by: OpenBehavior is related to: Spike Forest |
DOI:10.7554/elife.55167 | Free, Freely available | SCR_021472 | Spike Forest | 2026-02-14 02:05:44 | 0 | ||||||||
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Pypreclin project Resource Report Resource Website |
Pypreclin project (RRID:SCR_021473) | data or information resource, portal, project portal | Project related to preprocessing of images. Provieds software Python tool to processes raw macaque fMRI images using algorithms embedded in automatic pipeline. | Raw macaque fMRI images, fMRI images, macaque images, Python, OpenBehavior |
is listed by: OpenBehavior is related to: Pypreclin |
DOI:10.1016/j.neuroimage.2019.116353 | Free, Freely available | SCR_021473 | Pypreclin | 2026-02-14 02:05:37 | 0 | ||||||||
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MNE Scan project Resource Report Resource Website |
MNE Scan project (RRID:SCR_021470) | data or information resource, portal, project portal | Project related to real time acquisition and processing of electrophysiological data.Provides software tool for acquisition and processing of electrophysiological data. | Electrophysiological data processing, medical regulatory requirements, build standalone applications, MEG data acquisition, MEG data processing, EEG data acquisition, MEG data acquisition, OpenBehavior |
is listed by: OpenBehavior is related to: MNE Scan |
DOI:10.1016/j.jneumeth.2018.03.020 | Free, Freely available | SCR_021470 | MNE Scan | 2026-02-14 02:05:20 | 0 | ||||||||
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3DTracker project Resource Report Resource Website |
3DTracker project (RRID:SCR_021440) | data or information resource, portal, project portal | Project related to markerless computerized behavioral analysis for laboratory animals.Provides open source 3D video based behavioral analysis system for neuroscience. System includes open source software tool for 3D-video based markerless computerized behavioral analysis. | 3D video, computerized behavioral analysis, laboratory animals, reconstruct 3D image, animal image, 3D image, estimate animal 3D pose, behavior measurement, freely moving, head fixed, OpenBehavior |
is listed by: OpenBehavior is related to: 3DTracker |
Free, Freely available | SCR_021440 | 3DTracker | 2026-02-14 02:05:47 | 0 | |||||||||
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LinCoM project Resource Report Resource Website |
LinCoM project (RRID:SCR_021438) | data or information resource, portal, project portal | Project related to animal behavior in complex mazes.Provides software MATLAB package for linearization of place fields in complex mazes. | Place fields linearization, complex mazes, producing linear place fields, hippocampal cells, complex mazes behavior, OpenBehavior |
is listed by: OpenBehavior is related to: LinCoM |
DOI:10.1101/2020.08.17.253849 | Free, Freely available | SCR_021438 | LinCoM | 2026-02-14 02:05:37 | 0 | ||||||||
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EthoWatcher project Resource Report Resource Website |
EthoWatcher project (RRID:SCR_021435) | data or information resource, portal, project portal | Project related to video tracking, detailed ethography, and extraction of kinematic variables from digital video files of laboratory animals.Provides computational tool developed at Federal University of Santa Catarina. | Video tracking, kinematic variables extraction. digital video files, laboratory animals, OpenBehavior |
is listed by: OpenBehavior is related to: EthoWatcher has parent organization: Federal University of Santa Catarina; Santa Catarina; Brazil |
DOI:10.1016/j.compbiomed.2011.12.002 | Free, Freely available | SCR_021435 | EthoWatcher | 2026-02-14 02:05:20 | 0 | ||||||||
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Automated Rodent Tracker project Resource Report Resource Website |
Automated Rodent Tracker project (RRID:SCR_021432) | ART | data or information resource, portal, project portal | Project related to development of automated rodent tracking position and movement. Provides software tool to automatically track rodent.Used to track head movements, body movements and also aspects of body size.Identifies certain behaviours from video footage, such as rotations, moving forwards, interacting with objects and staying still. | Track rodent position, track movement, track head movements, track body movements, OpenBehavior |
is listed by: OpenBehavior is related to: Automated Rodent Tracker |
DOI:10.1016/j.jneumeth.2017.04.006 | Free, Freely available | SCR_021432 | Automated Rodent Tracker | 2026-02-14 02:05:43 | 0 | |||||||
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DeepSqueak project Resource Report Resource Website |
DeepSqueak project (RRID:SCR_021450) | data or information resource, portal, project portal | Project related to rodent social communication through repertoire of ultrasonic vocalizations. Provides deep learning based system for quantification of Ultrasonic Vocalizations.Includes software MATLAB package for high throughput USV detection, classification, and analysis. | data quantification, ultrasonic vocalizations quantification, ultrasonic vocalization, OpenBehavior |
is listed by: OpenBehavior is related to: DeepSqueak |
DOI:10.1038/s41386-018-0303-6 | Free, Freely available | SCR_021450 | DeepSqueak | 2026-02-14 02:05:20 | 0 |
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