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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Spanish National Cancer Research Center Resource Report Resource Website 1+ mentions |
Spanish National Cancer Research Center (RRID:SCR_014054) | CNIO | institution | A cancer research center whose goal is to offer innovative technoligies to spur the develpment of new methods of diagnosing and treating cancer. CNIO contains a variety of programs of investigation, including a biotechnology program, a clinical research program, and a molecular oncology program. CNIO also provides services that allow researchers to access and use technologies and tools such as cytogenetics and monoclonal antibodies, and hosts a biomedical biobank. | topical portal, research, oncology |
is related to: Open PHACTS has parent organization: Institute of Health Carlos III is parent organization of: Bionemo is parent organization of: FireDB is parent organization of: Spanish National Tumour Bank Network is parent organization of: Asterias is parent organization of: APPRIS is parent organization of: PLAN2L is parent organization of: BeCalm |
cancer | Public, Available to the research community | SCR_014054, grid.7719.8, ISNI: 0000 0000 8700 1153 | https://ror.org/00bvhmc43 | SCR_014054 | Centro Nacional de Investigaciones Oncologicos | 2026-02-14 02:02:52 | 1 | |||||
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My Cancer Genome Resource Report Resource Website 50+ mentions |
My Cancer Genome (RRID:SCR_004140) | MCG | data or information resource, database | A freely available online personalized cancer medicine knowledge resource for physicians, patients, caregivers and researchers that gives up-to-date information on what mutations make cancers grow and related therapeutic implications, including available clinical trials. It is a one-stop tool that matches tumor mutations to therapies, making information accessible and convenient for busy clinicians. | genome, disease, genome, medicine, clinical trial, mutation, therapy, FASEB list |
is listed by: OMICtools has parent organization: Vanderbilt University; Tennessee; USA |
Cancer, Tumor | PMID:32483629 | OMICS_01552 | SCR_004140 | MyCancerGenome.org | 2026-02-14 02:06:16 | 97 | ||||||
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Bremen Cancer Registry Resource Report Resource Website 1+ mentions |
Bremen Cancer Registry (RRID:SCR_004093) | BKR | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 9, 2023. A population based database collecting incident cases of cancer diagnosed since January 1998 in the population of the Federal state of Bremen. The Registry provides data for the analysis of * age specific time trends and geographical patterns of cancer incidence in men and women * cancer causes (e.g. work-related, environmental and personal risk factors) * epidemiological evaluation of screening programs * survival analysis of cancer patients. Since the incidence year of 2001, the Registry has a completeness level of > 95 %, based on expected values provided by the Robert Koch Institute. | registry, male, female, age | is related to: Robert Koch Institute; Berlin; Germany | Cancer | German Federal Ministry of Health | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_158557 | http://134.102.3.71/ http://www.krebsregister.bremen.de |
SCR_004093 | Bremer Krebsregister | 2026-02-14 02:06:13 | 3 | ||||
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Mouse Tumor Biology Database Resource Report Resource Website 1+ mentions |
Mouse Tumor Biology Database (RRID:SCR_006517) | MTB | data or information resource, database | Database supports use of mouse model system for human cancer by providing comprehensive resource for data and information on various tumor models. | endogenous, knock out mouse, hybrid, inbred mouse strain, induced, mouse, mutant, pathology, tumor, gene, organ, strain, genetics, pathology, image, gene expression |
is related to: Mouse Genome Informatics (MGI) has parent organization: Jackson Laboratory |
Cancer, Tumor, Hereditary cancer | NCI CA089713 | PMID:18432250 PMID:21282667 |
The community can contribute to this resource, Acknowledgement requested, For research and educational purposes, Non-commercial, Without the prior express written permission | nif-0000-03163, SCR_017516 | http://tumor.informatics.jax.org/mtbwi/index.do | SCR_006517 | MGI: MTB Database, Mouse Tumor Biology (MTB) Database, MTB Database, MTB: Mouse Tumor Biology Database | 2026-02-14 02:06:26 | 8 | |||
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HIstome: The Histone Infobase Resource Report Resource Website 1+ mentions |
HIstome: The Histone Infobase (RRID:SCR_006972) | HIstome | data or information resource, database | Database of human histone variants, sites of their post-translational modifications and various histone modifying enzymes. The database covers 5 types of histones, 8 types of their post-translational modifications and 13 classes of modifying enzymes. Many data fields are hyperlinked to other databases (e.g. UnprotKB/Swiss-Prot, HGNC, OMIM, Unigene etc.). Additionally, this database also provides sequences of promoter regions (-700 TSS +300) for all gene entries. These sequences were extracted from the UCSC genome browser. Sites of post-translational modifications of histones were manually searched from PubMed listed literature. Current version contains information for about ~50 histone proteins and ~150 histone modifying enzymes. HIstome is a combined effort of researchers from two institutions, Advanced Center for Treatment, Research and Education in Cancer (ACTREC), Navi Mumbai and Center of Excellence in Epigenetics (CoEE), Indian Institute of Science Education and Research (IISER), Pune. | histone, protein, enzyme, modifying enzyme, post-translational modification, variant, promoter region, gene, epigenetic regulation, india, bio.tools |
is listed by: re3data.org is listed by: Debian is listed by: bio.tools has parent organization: ACTREC - Advanced Centre for Treatment Research and Education in Cancer |
Cancer | ACTREuropean Union - Advanced Centre for Treatment Research and Education in Cancer ; Government of India |
PMID:22140112 | Free, Public, Acknowledgement requested | biotools:histome, r3d100010977, nlx_151419 | http://www.actrec.gov.in/histome/ https://bio.tools/histome https://doi.org/10.17616/R3RD0R |
http://www.histome.net/ | SCR_006972 | 2026-02-14 02:05:57 | 1 | |||
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ChimerDB Resource Report Resource Website 10+ mentions |
ChimerDB (RRID:SCR_007596) | data or information resource, database | Knowledgebase of fusion transcripts collected from various public resources such as the Sanger CGP, OMIM, PubMed, and Mitelman's database. It is an alignment viewer to facilitate examining reliability of fusion transcripts and inferring functional significance., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | knowledge base, fusion transcript, transcript alignment, alignment viewer | has parent organization: Ewha Womans University; Seoul; South Korea | Tumor, Cancer | Korean Ministry of Education Science and Technology ; Gwangju Institute of Science and Technology ; Korean Ministry of Science and Technology R01-2008-000-20818-0; Korean Ministry of Science and Technology 2007-03983; National Core Research Center R15-2006-020; Korean Rural Development Administration 20070401034010 |
PMID:19906715 PMID:16381848 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02659 | http://genome.ewha.ac.kr/ChimerDB/ | SCR_007596 | 2026-02-14 02:06:29 | 29 | |||||
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CTDatabase Resource Report Resource Website 50+ mentions |
CTDatabase (RRID:SCR_007614) | data or information resource, database | A database of information about each Cancer-Testis (CT) gene, its gene products and the immune response induced in cancer patients by these proteins. CT antigens are proteins normally expressed only in the human germ line but that are also present in a significant subset of malignant tumors. The practical importance of these proteins is that due to their restricted expression pattern they are frequently recognized by the immune system of cancer patients. Moreover, this antigenicity has raised the possibility of their being used as vaccines to actively stimulate immune responses in order to combat tumor growth. As a result worldwide research into many aspects of CT antigens is rapidly growing prompting the construction of this database as a resource for investigators involved in this area. | data set, FASEB list | is listed by: 3DVC | Cancer | nif-0000-02704 | SCR_007614 | CTDatabase | 2026-02-14 02:06:29 | 93 | ||||||||
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DriverDB Resource Report Resource Website 10+ mentions |
DriverDB (RRID:SCR_007736) | DriverDB | data or information resource, database | A database for cancer driver gene/mutation that incorporates a huge amount of exome-seq data, annotation databases (such as dbSNP, 1000 Genome and Cosmic), and published bioinformatics algorithms dedicated to driver gene/mutation identification. | gene, mutation |
is listed by: OMICtools has parent organization: National Yang-Ming University; Taipei; Taiwan |
Cancer | PMID:24214964 | OMICS_00268 | SCR_007736 | DriverDB: A database for cancer driver gene/mutation | 2026-02-14 02:06:38 | 24 | ||||||
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National Cancer Institute Cancer Statistics Cancer Stat Facts Resource Report Resource Website 1+ mentions |
National Cancer Institute Cancer Statistics Cancer Stat Facts (RRID:SCR_024437) | data or information resource | Collection of statistical summaries for number of common cancer types. They were developed to provide quick overview of frequently requested cancer statistics. Available statistics may include incidence, mortality, survival, stage, prevalence, and lifetime risk. Links to additional resources from NCI including risk factors, treatment, and clinical trials are also provided. The statistics will be updated annually to coincide with the SEER data release. | NCI, statistical summaries collection, cancer statistics, incidence, mortality, survival, stage, prevalence, lifetime risk, risk factors, treatment, clinical trials links, | cancer | Free, Available for download, Freely available | SCR_024437 | 2026-02-14 02:04:56 | 3 | ||||||||||
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Resource for Genetic Epidemiology Research on Adult Health and Aging Resource Report Resource Website 1+ mentions |
Resource for Genetic Epidemiology Research on Adult Health and Aging (RRID:SCR_010472) | GERA | data or information resource, database | Human genetics data from an immense (78,000) and ethnically diverse population available for secondary analysis to qualified researchers through the database of Genotypes and Phenotypes (dbGaP). It offers the opportunity to identify potential genetic risks and influences on a broad range of health conditions, particularly those related to aging. The GERA cohort is part of the Research Program on Genes, Environment, and Health (RPGEH), which includes more than 430,000 adult members of the Kaiser Permanente Northern California system. Data from this larger cohort include electronic medical records, behavioral and demographic information from surveys, and saliva samples from 200,000 participants obtained with informed consent for genomic and other analyses. The RPGEH database was made possible largely through early support from the Robert Wood Johnson Foundation to accelerate such health research. The genetic information in the GERA cohort translates into more than 55 billion bits of genetic data. Using newly developed techniques, the researchers conducted genome-wide scans to rapidly identify single nucleotide polymorphisms (SNPs) in the genomes of the people in the GERA cohort. These data will form the basis of genome-wide association studies (GWAS) that can look at hundreds of thousands to millions of SNPs at the same time. The RPGEH then combined the genetic data with information derived from Kaiser Permanente''s comprehensive longitudinal electronic medical records, as well as extensive survey data on participants'' health habits and backgrounds, providing researchers with an unparalleled research resource. As information is added to the Kaiser-UCSF database, the dbGaP database will also be updated. | genotype, phenotype, genome-wide association study, saliva, dna, male, female, health condition, electronic medical record, single nucleotide polymorphism, adult human, late adult human, gene, genome |
has parent organization: NCBI database of Genotypes and Phenotypes (dbGap) has parent organization: University of California at San Francisco; California; USA |
Aging, Cardiovascular disease, Osteoarthritis, Depressive Disorder, Insomnia, Eye disease, Cancer, Diabetes | NIMH ; NIH Office of the Director ; NIA AG036607 |
Application required, Non-commercial, Data Use Certification Agreement | nlx_157735 | SCR_010472 | Genetic Epidemiology Research on Aging | 2026-02-14 02:06:11 | 9 | |||||
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caHUB Resource Report Resource Website |
caHUB (RRID:SCR_009657) | caHUB | data or information resource, narrative resource, standard specification | THIS RESOURCE IS NO LONGER IN SERVICE. Documented July 5, 2018. A national center for biospecimen science and standards to advance cancer research and treatment. It was created in response to the critical and growing need for high-quality, well-documented biospecimens for cancer research. The initiative builds on resources already developed by the NCI, including the Biospecimen Research Network and the NCI Best Practices for Biospecimen Resources, both of which were developed to address challenges around standardization of the collection and dissemination of quality biospecimens. caHUB will develop the infrastructure for collaborative biospecimen research and the production of evidence-based biospecimen standard operating procedures. | biospecimen, clinical, biomaterial supply resource, tissue |
is listed by: NIDDK Information Network (dkNET) is related to: Biorepositories and Biospecimens Research Branch has parent organization: National Cancer Institute |
Cancer | NCI ; ARRA |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_156094 | SCR_009657 | The Cancer Human Biobank, cancer Human Biobank | 2026-02-14 02:05:05 | 0 | |||||
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Mario Negri Institute for Pharmacological Research; Milan; Italy Resource Report Resource Website |
Mario Negri Institute for Pharmacological Research; Milan; Italy (RRID:SCR_011361) | Mario Negri Institute | institution | A not-for-profit biomedical research institute whose main aim is to help defend human health and life. Research programs span from the molecular level to the whole human being, and the findings help build up the basis for developing new drugs, and making existing ones more effective. The main research headings are the battle against cancer, nervous and mental illnesses, cardiovascular and kidney diseases, rare diseases and the toxic effects of environmental contaminants, mother and child''''s health. The Institute is also involved in research on pain relief and drug addiction. Parallel to its biomedical investigations, the Mario Negri Institute runs training schemes for laboratory technicians and graduate researchers. It takes part in a range of initiatives to communicate information in biomedicine, on a general level and with the specific aims of improving health care practice, and encouraging more rational use of drugs. There are also research units in Bergamo, at Ranica - near Bergamo - and at Santa Maria Imbaro, near Chieti. | is related to: PharmaCog | Cancer, Nervous illness, Mental illnesses, Cardiovascular disease, Kidney disease, Rare disease, Environmental contaminant toxicity | nlx_158317 | SCR_011361 | Mario Negri Institute for Pharmacological Research, Istituto di Ricerche Farmacologiche Mario Negri, Mario Negri Istituto di Ricerche Farmacologiche | 2026-02-14 02:01:58 | 0 | ||||||||
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German Cancer Research Center Resource Report Resource Website 1+ mentions |
German Cancer Research Center (RRID:SCR_012942) | DKFZ | institution | Biomedical research institute in Germany that investigates the mechanisms of cancer and works to identify cancer risk factors. They provide the foundations for developing novel approaches in the prevention, diagnosis, and treatment of cancer and are a member of the Helmholtz Association of National Research Centers. Professor Harald zur Hausen was awarded the Nobel Prize for Medicine for his outstanding scientific contribution to the study of human papillomaviruses (HPV). In addition, the staff of the Cancer Information Service (KID) offers information about the widespread disease of cancer for patients, their families, and the general public. The Center is funded by the German Federal Ministry of Education and Research (90%) and the State of Baden-Württemberg (10%). |
is related to: Helmholtz Center Munich is related to: MIP-DILI is parent organization of: AutoPrime is parent organization of: Axel Database is parent organization of: glycomedb is parent organization of: MITK Diffusion is parent organization of: LifeDB is parent organization of: LipOXygenases DataBase is parent organization of: Diffusion MRI - In-vivo and Phantom Data is parent organization of: Diffusion MRI at DKFZ Heidelberg is parent organization of: DKFZ Genomics and Proteomics Core Facility is parent organization of: German Cancer Research Center Labs and Facilities is parent organization of: GenomeRNAi is parent organization of: Division of Molecular Genome Analysis is parent organization of: LiGraph is parent organization of: pdb-data is parent organization of: GENSCAN is parent organization of: DKFZ Small Animal Imaging Core Facility |
Cancer | grid.7497.d, Wikidata: Q449325, ISNI: 0000 0004 0492 0584, nlx_36666, Crossref funder ID: 100008658 | https://ror.org/04cdgtt98 | SCR_012942 | Deutsches Krebsforschungszentrum | 2026-02-14 02:02:25 | 7 | |||||||
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CaTCh FISH Chip Resource Report Resource Website Rating or validation data |
CaTCh FISH Chip (RRID:SCR_015810) | resource | Equipment that is a magnetic micropore chip for rapid unbiased circulating tumor cell isolation and in situ RNA analysis. The chip detects tumor cells and can help doctors treat patients with these tumors. | hardware, instrument, equipment, magnetic micropore, micropore chip, tumor cell isolation, rna analysis, in situ, microtechnology, microchip, bioengineering | Pancreatic cancer, cancer | PMID:28809985 | Commercially available | SCR_015810 | 2026-02-14 02:03:09 | 0 | |||||||||
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NanoParticle Ontology Resource Report Resource Website 1+ mentions |
NanoParticle Ontology (RRID:SCR_010369) | NPO | data or information resource, ontology, controlled vocabulary | An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy. | owl | is listed by: BioPortal | Cancer | nlx_157497 | http://www.nano-ontology.org | SCR_010369 | 2026-02-14 02:01:57 | 1 | |||||||
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Cancer Gene Index Resource Report Resource Website 1+ mentions |
Cancer Gene Index (RRID:SCR_001117) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented on November 17, 2016. A database of genes that have been experimentally associated with human cancer diseases and/or pharmacological compounds, the evidence of these associations, and relevant annotations on the data. | gene, cancer, genetics, pharmacology, disease, database, data |
is listed by: OMICtools has parent organization: National Cancer Institute has parent organization: National Cancer Institute |
Cancer | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_01575 | SCR_001117 | 2026-02-14 02:06:03 | 2 | ||||||||
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ASPicDB Resource Report Resource Website 1+ mentions |
ASPicDB (RRID:SCR_002102) | ASPicDB | data or information resource, database | A database to access reliable annotations of the alternative splicing pattern of human genes, obtained by ASPic algorithm (Castrignano et al. 2006), and to the functional annotation of predicted isoforms. Users may select and extract specific sets of data related to genes, transcripts and introns fulfilling a combination of user-defined criteria. Several tabular and graphical views of the results are presented, providing a comprehensive assessment of the functional implication of alternative splicing in the gene set under investigation. ASPicDB also includes information on tissue-specific splicing patterns of normal and cancer cells, based on available EST data and their library source annotation. | annotation, splicing pattern, gene, transcript, intron, protein, variant, alternative splicing, splicing, blast, exon, u2, u12, isoform |
is listed by: OMICtools is listed by: SoftCite has parent organization: University of Bari; Bari; Italy |
Normal, Cancer | PMID:21051348 PMID:18388144 |
Free, Freely available | OMICS_01882 | http://srv00.ibbe.cnr.it/ASPicDB/ | SCR_002102 | Alternative Splicing Prediction Data Base, ASPicDB - A Database tool for alternative splicing analysis | 2026-02-14 02:06:04 | 7 | ||||
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NCI Metathesaurus Resource Report Resource Website |
NCI Metathesaurus (RRID:SCR_003565) | NCIm | data or information resource, database | A wide-ranging biomedical terminology database that covers most terminologies used by NCI for clinical care, translational and basic research, and public information and administrative activities. NCIm features: * Maps 4,000,000 terms from more than 75 sources into 2,000,000 biomedical concepts that represent their meaning. * Displays preferred terms, synonyms, definitions, and other information from each source. * Links to NCI Thesaurus and other related information sources. * Contains 22,000,000 cross-links between content elements. * Updated frequently by a team of biomedical terminology and subject matter experts. NCIm contains most public domain terminologies from the National Library of Medicine's UMLS Metathesaurus, as well as many other biomedical terminologies created by or of interest to NCI and its partners. Some propriety terminologies are included, with permission, and have restrictions on their use. The current version of the NCI Metathesaurus, based on the UMLS build 2013AA, covers up to National Cancer Institute Thesaurus, 13.12d. A viewer for the UMLS changes document can be downloaded. | biomedical, clinical, terminology |
is related to: NCI Thesaurus has parent organization: National Cancer Institute |
Cancer | nlx_157699 | SCR_003565 | 2026-02-14 02:06:15 | 0 | ||||||||
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Richard M. Lucas Center for Imaging Resource Report Resource Website 1+ mentions |
Richard M. Lucas Center for Imaging (RRID:SCR_001406) | Lucas Center, CAMRT | biomedical technology research center, training resource | Biomedical technology research center that develops innovative technologies in five core research areas of magnetic resonance imaging and spectroscopy (MRI/MRS): # image reconstruction, fast imaging and radiofrequency (RF) pulse design methods, # R hardware development, # body imaging methods, # neuroimaging methods. # MR spectroscopy methods. In each of these areas, they capitalize on the long-standing, successful partnership and extensive experience in Stanford's Radiology and Electrical Engineering departments to improve and expand imaging technology for use in basic research and clinical care, and to provide cutting edge opportunities to the extramural community for biomedical research with MRI. Over its more than 18 years of existence, CAMRT has been motivated by and has served a wide base of extramurally sponsored collaborators and service users from leading medical and research institutions. Examples of collaborative projects are the development of real-time functional MRI biofeedback methods for neuroscience and clinical applications such as pain remediation, development of methods to mitigate metal artifacts in musculoskeletal imaging, development of novel RF pulses for many applications, and studies of breast cancer with efficient MRS methods. | magnetic resonance imaging, spectroscopy, x-ray imaging, ct imaging, imaging, neuroimaging | has parent organization: Stanford University School of Medicine; California; USA | Brain disorder, Cancer, Stroke, Heart disease | NIBIB | Free, Freely Available | nlx_152629 | http://med.stanford.edu/rsl/about/lucas.html | SCR_001406 | Lucas Center for Imaging, Center for Advanced Magnetic Resonance Technology | 2026-02-14 02:07:27 | 1 | ||||
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Southwestern NMR Center for In Vivo Metabolism Resource Report Resource Website 1+ mentions |
Southwestern NMR Center for In Vivo Metabolism (RRID:SCR_001429) | Southwestern NMR Center | biomedical technology research center, training resource | Biomedical technology research center that develops and applies new methods for analysis of metabolic networks in intact tissues, animals and human patients. The importance of understanding abnormal metabolism in common diseases such as cancer, diabetes and heart disease has long been appreciated. Because of constraints in technology, however, much of this research has been conducted in isolated systems where clinical relevance may be uncertain. Progress in magnetic resonance technology provides a foundation for major advances towards new ways of imaging metabolism in patients. These new techniques offer the advantage of imaging biochemical pathways without radiation. The focus of this Resource is to bring these technologies to a level where clinical research is feasible through the development of new MR contrast agents, NMR spectroscopy at high fields, and imaging of hyperpolarized 13C. | metabolic network, tissue, imaging, metabolism, nuclear magnetic resonance, magnetic resonance, nuclear magnetic resonance spectroscopy | has parent organization: University of Texas Southwestern Medical Center; Texas; USA | Cancer, Diabetes, Heart disease | NIBIB 5P41EB015908-28 | Free, Freely Available | nlx_152653 | SCR_001429 | Southwestern NMR Center for in vivo Metabolism - NIBIB | 2026-02-14 02:07:27 | 1 |
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