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http://research.i2r.a-star.edu.sg:8080/kleisli/demos/pedigree/
Software application (entry from Genetic Analysis Software)
Proper citation: PEDIGREE-VISUALIZER (RRID:SCR_000842) Copy
http://vorlon.case.edu/~jxl175/haplotyping.html
THIS RESOURCE IS NO LONGER IN SERVICE.Documented on August 23,2022. Software application for inferring haplotypes from genotypes on pedigree data (entry from Genetic Analysis Software)
Proper citation: PEDPHASE (RRID:SCR_000843) Copy
http://animalgene.umn.edu/locusmap/index.html
Software package designed for rapid linkage analysis and map construction of loci with a variety of inheritance modes. (entry from Genetic Analysis Software)
Proper citation: LOCUSMAP (RRID:SCR_000840) Copy
http://www-genome.wi.mit.edu/ftp/pub/software/rhmapper/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 30, 2022. An interactive software program for radiation hybrid mapping (entry from Genetic Analysis Software)
Proper citation: RHMAPPER (RRID:SCR_000845) Copy
http://www.geneticepi.com/Research/software/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 16,2023. Software application (entry from Genetic Analysis Software).
Proper citation: MILD (RRID:SCR_003335) Copy
http://linkage.rockefeller.edu/pawe3d/
Software application (entry from Genetic Analysis Software)
Proper citation: PAWE-3D (RRID:SCR_003326) Copy
http://www.people.fas.harvard.edu/~junliu/genotype/
Software application (entry from Genetic Analysis Software)
Proper citation: GS-EM (RRID:SCR_003992) Copy
http://www.uni-bonn.de/~umt70e/soft.htm
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application that calculates the sample size required for obtaining a prescribed power against a specified alternative for TDT. (entry from Genetic Analysis Software)
Proper citation: TDTPOWER (RRID:SCR_005021) Copy
http://genetics.agrsci.dk/~bg/popgen/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 11, 2023. Software application that calculates a number of different genetic identities, phylogeny reconstructing measures, and distance reconstructing measures (entry from Genetic Analysis Software)
Proper citation: POPDIST (RRID:SCR_004904) Copy
http://bioinf.wehi.edu.au/folders/melanie/haploclusters.html
Software program designed to detect excess haplotypes sharing in datasets consisting of case and control haplotypes. Excess haplotype sharing can be seen around disease loci in case samples since LD persists longer here than in the controls where LD is persisting only according to the relatedness of the individuals in the population, i.e. the age of the population. (entry from Genetic Analysis Software)
Proper citation: HAPLOCLUSTERS (RRID:SCR_007439) Copy
http://gaow.github.io/genetic-analysis-software/l-1.html#ldsupport
Software application (entry from Genetic Analysis Software)
Proper citation: LDSUPPORT (RRID:SCR_007036) Copy
http://cedar.genetics.soton.ac.uk/pub/PROGRAMS/BETA
Software application for non-parametric linkage analysis using allele sharing in sib pairs (entry from Genetic Analysis Software)
Proper citation: BETA (RRID:SCR_007556) Copy
https://www.jurgott.org/linkage/LinkagePC.html
Standard software package for genetic linkage called LINKAGE. Genetic linkage analysis is statistical technique used to map genes and find approximate location of disease genes.
Proper citation: LINKAGE (RRID:SCR_007033) Copy
http://www.wesbarris.com/mapcreator/
Software application to create gene maps using either radiation hybrid data or linkage data (entry from Genetic Analysis Software)
Proper citation: MAPCREATOR (RRID:SCR_008001) Copy
http://www.sph.umich.edu/csg/abecasis/GOLD/
Software package that provides a graphical summary of linkage disequilibrium in human genetic data. The graphical summary is well suited to the analysis of dense genetic maps, where contingency tables are cumbersome to interpret. An interface to the Simwalk2 application allows for the analysis of family data.
Proper citation: Graphical Overview of Linkage Disequilibrium (RRID:SCR_007151) Copy
http://bios.ugr.es/BMapBuilder/
Software application (entry from Genetic Analysis Software)
Proper citation: BMAPBUILDER (RRID:SCR_007264) Copy
https://cran.r-project.org/web/packages/stepwise/index.html
Software application that is a stepwise approach to identifying recombination breakpoints in a sequence alignment (entry from Genetic Analysis Software)
Proper citation: R/STEPWISE (RRID:SCR_007420) Copy
http://www.mds.qmw.ac.uk/statgen/dcurtis/software.html
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 5th,2023. Software application for TDT test on markers with more than two alleles using a logistic regression analysis. (entry from Genetic Analysis Software).
Proper citation: ETDT (RRID:SCR_007576) Copy
http://www-gene.cimr.cam.ac.uk/clayton/software/
THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Software application that tests for association between genetic marker and disease by examining the transmission of markers from parents to affected offspring. The main features which differ from other similar programs are: (1) It can deal with transmission of multi-locus haplotypes, even if phase is unknown, and (2) Parental genotypes may be unknown. (entry from Genetic Analysis Software)
Proper citation: TRANSMIT (RRID:SCR_007571) Copy
http://gaow.github.io/genetic-analysis-software/l/linkage---ceph/
Software application (entry from Genetic Analysis Software)
Proper citation: LINKAGE - CEPH (RRID:SCR_007048) Copy
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