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URL: https://github.com/nf-core/rnaseq
Proper Citation: rnaseq (RRID:SCR_026973)
Description: Software RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control. Can be used to analyse RNA sequencing data obtained from organisms with reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix QC report.
Synonyms: nf-core/rnaseq
Resource Type: software toolkit, source code, software resource
Keywords: RNA sequencing, sequencing analysis, organisms, data, reference genome, annotation,
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