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URL: https://github.com/katerinakazantseva/strainy
Proper Citation: Strainy (RRID:SCR_026430)
Description: Software tool for phasing and assembly of bacterial strains from long-read sequencing data (either Oxford Nanopore or PacBio). Given reference (or collapsed de novo assembly) and set of aligned reads as input, tool produces multi-allelic phasing, individual strain haplotypes and strain-specific variant calls. Used for phasing and assembly of strain haplotypes from long-read metagenome sequencing.
Resource Type: software application, source code, software resource
Defining Citation: PMID:39327484
Keywords: phasing and assembly, strain haplotypes, long-read metagenome sequencing,
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