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URL: https://github.com/phillipnicol/scGBM
Proper Citation: scGBM (RRID:SCR_025518)
Description: Software application for model-based dimensionality reduction of scRNA-seq data. Quantifies uncertainty in each cell's latent position and leverages these uncertainties to assess confidence associated with given cell clustering. On real and simulated single-cell data produces low-dimensional embeddings that better capture relevant biological information while removing unwanted variation. Used for model-based dimensionality reduction for single-cell RNA-seq with generalized bilinear models.
Resource Type: software resource, source code
Defining Citation: PMID:37162914
Keywords: Generalized bilinear models, model-based dimensionality reduction, scRNA-seq data, removing unwanted variation,
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