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URL: https://github.com/ParkerLab/ataqv
Proper Citation: ataqv (RRID:SCR_023112)
Description: Software package for QC and visualization of ATAC-seq results. Used to examine aligned reads and report basic metrics, including reads mapped in proper pairs, optical or PCR duplicates, reads mapping to autosomal or mitochondrial references, ratio of short to mononucleosomal fragment counts, mapping quality, various kinds of problematic alignments.
Resource Type: software resource, software toolkit
Defining Citation: PMID:32213349
Keywords: QC of ATAC-seq results, visualization of ATAC-seq results, examine aligned reads, mapping quality,
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