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dbPTM: An informational repository of proteins and post-translational modifications (RRID:SCR_007619)Copy Citation Copied
URL: http://dbptm.mbc.nctu.edu.tw/
Proper Citation: dbPTM: An informational repository of proteins and post-translational modifications (RRID:SCR_007619)
Description: dbPTM is a database that compiles information on protein post-translational modifications (PTM) such as the modified sites, solvent accessibility of surrounding amino acids, protein secondary and tertiary structures, protein domains, and protein variations. The version 2.0 of dbPTM integrates the experimentally validated PTM sites with referable literatures from Swiss-Prot, Phospho.ELM, O-GLYCBASE, and UbiProt. In all of the collected PTM information, about 25 types of PTM with enough experimentally validated sites are trained the profile hidden Markov models (HMMs) to detect the potential PTM sites with 100% specificity against Swiss-Prot proteins. To help users investigating more detail in each type of PTM, the substrate peptide specificity such as positional amino acid frequency, solvent accessibility and secondary structure surrounding the modified sites are also provided. Moreover, the information of orthologous protein clusters is provided to users for analyzing whether the PTM sites located in the evolutionary conserved regions or not., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
Synonyms: dbPTM
Resource Type: data or information resource, database
Keywords: protein, protein post-translational modification, ptm
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