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URL: http://brainarray.mbni.med.umich.edu/Brainarray/Database/SearchSNP/snpfunc.aspx
Proper Citation: SNP Function Portal (RRID:SCR_001954)
Description: Database for exploring the function implication of single nucleotide polymorphism (SNP) alleles. It is designed to be a clearing house for all public domain SNP functional annotation data, as well as in-house functional annotations derived from different data sources. It currently contains SNP functional annotations in six major categories including genomic elements, transcription regulation, protein function, pathway, disease and population genetics. Besides extensive SNP functional annotations, it includes a search engine that accepts different types of genetic markers as input and identifies all genetically related SNPs based on the HapMap Phase II data as well as the relationship of different markers to known genes. As a result, the system allows users to identify the potential biological impact of genetic markers and complex relationships among genetic markers and genes, and it greatly facilitates knowledge discovery in genome-wide SNP scanning experiments.
Abbreviations: SNP Function Portal
Resource Type: analysis service resource, service resource, production service resource, database, data analysis service, data or information resource
Defining Citation: PMID:16873516
Keywords: single nucleotide polymorphism, linkage disequibrilium, functional annotation, function, annotation, genomic element, transcription regulation, protein function, pathway, disease, population genetics
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