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URL: https://maayanlab.cloud/chea3/
Proper Citation: ChIP-X Enrichment Analysis 3 (RRID:SCR_023159)
Description: Web based transcription factor enrichment analysis. Web server ranks TFs associated with user-submitted gene sets. ChEA3 background database contains collection of gene set libraries generated from multiple sources including TF-gene co-expression from RNA-seq studies, TF-target associations from ChIP-seq experiments, and TF-gene co-occurrence computed from crowd-submitted gene lists. Enrichment results from these distinct sources are integrated to generate composite rank that improves prediction of correct upstream TF compared to ranks produced by individual libraries.
Abbreviations: ChEA3
Synonyms: ChIP-X Enrichment Analysis Version 3 (ChEA3)
Resource Type: software resource, web application
Defining Citation: PMID:31114921
Keywords: Transcription Factor, gene sets, transcription factor enrichment analysis, TF-gene co-expression from RNA-seq studies, TF-target associations from ChIP-seq experiments, TF-gene co-occurrence, prediction of correct upstream,
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